chr3 : 98,758,729 98,759,393
664 bp 42 TFs 0 linked genes
This 664 bp open chromatin element has no linked target genes and is bound by 42 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:98,753,729 – 98,764,393
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP MM1-S GSE45984.BRD4.MM1-S 254 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 227 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 457 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 128 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 347 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP endothelial cell of umbilical vein ENCFF415XBG 79 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 476 bp overlap
ChIP DE DE-FOXA2-2 464 bp overlap
FOXP2 1 dataset
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 604 bp overlap
ChIP DE DE-GATA4-2 568 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 251 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP AGS GSE51705.GATA6.AGS 175 bp overlap
ChIP DE DE-GATA6-1 578 bp overlap
ChIP DE DE-GATA6-2 529 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 645 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 646 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 654 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 579 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 664 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 664 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 538 bp overlap
GRHL1 1 dataset
Motif DE_60h DE_60h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HDGF 1 dataset
ChIP GM12878 ENCFF653WYI 378 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 144 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 316 bp overlap
MSC 1 dataset
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Rhox11 1 dataset
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 407 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 281 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 356 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 353 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 188 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 315 bp overlap
SNAI2 1 dataset
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 380 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZBTB18 1 dataset
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF687 1 dataset
ChIP GM12878 ENCFF233SGE 339 bp overlap
ZNF85 1 dataset
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap