chr3 : 81,301,281 81,301,593
312 bp 30 TFs 0 linked genes
This 312 bp open chromatin element has no linked target genes and is bound by 30 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:81,296,281 – 81,306,593
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
BRD4 6 datasets
ChIP BE2C GSE80151.BRD4.BE2C 312 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 235 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 256 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 312 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 312 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 312 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 312 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 283 bp overlap
CTCF 10 datasets
ChIP CD14 ENCSR000ATN.CTCF.CD14 159 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 59 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 165 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 171 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 173 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 183 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 112 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 312 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 157 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 178 bp overlap
DUX4 1 dataset
ChIP HEK293 GSE75791.DUX4.HEK293 155 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 242 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 312 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 93 bp overlap
ChIP DE DE-FOXA2-2 134 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 312 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 312 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 312 bp overlap
ChIP SK-N-SH ENCFF764OZD 158 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 312 bp overlap
GATA3 8 datasets
ChIP BE2C GSE65664.GATA3.BE2C 271 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 187 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 279 bp overlap
ChIP SH-SY5Y ENCFF475HYF 287 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 312 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 299 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 287 bp overlap
ChIP SK-N-SH ENCFF040SSB 296 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 312 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 312 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 312 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 240 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 312 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 312 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 231 bp overlap
MYCN 8 datasets
ChIP BE2C GSE80151.MYCN.BE2C 213 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 226 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 273 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 224 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 222 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 232 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 213 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 278 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 312 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 281 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 312 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 311 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 312 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 274 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 312 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 312 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 208 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 283 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 285 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 266 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 312 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 312 bp overlap
ChIP SK-N-SH ENCFF754TJT 118 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 166 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 245 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 248 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 205 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 282 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 293 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 247 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 247 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 298 bp overlap