chr3 : 68,705,874 – 68,706,547
673 bp 60 TFs 0 linked genes
This 673 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:68,700,874 – 68,711,547
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 205 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 258 bp overlap
BHLHE22 2 datasets
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
CBFA2T2 1 dataset
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 193 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DMRTA2 1 dataset
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 158 bp overlap
ERG 1 dataset
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 163 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 85 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 474 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 217 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 384 bp overlap
ChIP DE DE-FOXA2-2 507 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 255 bp overlap
GATA1 6 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 237 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 115 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 278 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 150 bp overlap
GATA1::TAL1 1 dataset
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 5 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 417 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 265 bp overlap
GATA3 4 datasets
ChIP BE2C GSE65664.GATA3.BE2C 313 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 229 bp overlap
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 337 bp overlap
GATA4 14 datasets
ChIP DE DE-GATA4-1 508 bp overlap
ChIP DE DE-GATA4-2 550 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP G296S GSE85628.GATA4.G296S 580 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 580 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 244 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 469 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 470 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 665 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 368 bp overlap
ChIP foregut GSE117136.GATA4.foregut 284 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 364 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 495 bp overlap
ChIP DE DE-GATA6-2 603 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 481 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 508 bp overlap
ChIP foregut GSE117136.GATA6.foregut 431 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 509 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 423 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 239 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 559 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
KDM1A 4 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 340 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 175 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 637 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 216 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 155 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 137 bp overlap
NHLH1 2 datasets
Motif DE_36h DE_36h-NHLH1_MA0048.3 9 bp overlap
Motif DE_60h DE_60h-NHLH1_MA0048.3 9 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 341 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 261 bp overlap
Neurod2 2 datasets
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Olig2 2 datasets
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 673 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF725QFT 409 bp overlap
POU3F3 1 dataset
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
Prdm15 3 datasets
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 2 datasets
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
RBPJ 3 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Rhox11 1 dataset
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
SCRT1 1 dataset
Motif DE_36h DE_36h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_36h DE_36h-SCRT2_MA0744.3 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 374 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 427 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 441 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 411 bp overlap
SOX2 1 dataset
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 125 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 212 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 219 bp overlap
TAL1 4 datasets
ChIP CD34 GSE52924.TAL1.CD34 167 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 156 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 235 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 277 bp overlap
TBX5 4 datasets
ChIP G296S GSE85628.TBX5.G296S 310 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 310 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 358 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 396 bp overlap
TCF4 1 dataset
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 340 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 604 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 604 bp overlap
TFAP4 2 datasets
Motif DE_36h DE_36h-TFAP4_MA0691.1 10 bp overlap
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Tcf12 2 datasets
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Tfcp2l1 1 dataset
Motif DE_36h DE_36h-Tfcp2l1_MA0145.2 14 bp overlap
Twist2 2 datasets
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 118 bp overlap
ZNF317 2 datasets
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
ZNF701 3 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Zfp335 3 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
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