chr3 : 64,676,859 64,677,175
316 bp 31 TFs 2 linked genes
This 316 bp open chromatin element is linked to ADAMTS9-AS2 and ADAMTS9 and is bound by 31 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ADAMTS9-AS2 7.9 kb Proximal Proximity
ADAMTS9 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:64,671,859 – 64,682,175
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
BRD2 3 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 316 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 274 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 113 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 146 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 211 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 133 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 224 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 298 bp overlap
ChIP DE DE-FOXA2-2 316 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 302 bp overlap
ChIP DE DE-GATA4-2 316 bp overlap
ChIP foregut GSE117136.GATA4.foregut 305 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 316 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 264 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 313 bp overlap
ChIP DE DE-GATA6-2 316 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 316 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 316 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 316 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 316 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 316 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 316 bp overlap
ChIP foregut GSE117136.GATA6.foregut 316 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 286 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 278 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 259 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 267 bp overlap
JUN 1 dataset
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 194 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 298 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 144 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 167 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 198 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 99 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 316 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF044PYR 316 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 286 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 279 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 270 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 311 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 142 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 305 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 316 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 177 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 316 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 192 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 192 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 92 bp overlap
ZFX 2 datasets
ChIP MCF-7 ENCSR435OQD.ZFX.MCF-7 316 bp overlap
ChIP MCF-7 GSE102616.ZFX.MCF-7 246 bp overlap