chr2 : 172,550,527 172,550,829
302 bp 29 TFs 2 linked genes
This 302 bp open chromatin element is linked to PDK1 and ITGA6-AS1 and is bound by 29 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PDK1 5.2 kb Proximal Proximity
ITGA6-AS1 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:172,545,527 – 172,555,829
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 274 bp overlap
ChIP K562 ENCFF938UXQ 244 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 270 bp overlap
ChIP K562 ENCFF963TXY 186 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 302 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 192 bp overlap
ChIP K562 ENCFF673OEZ 269 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 244 bp overlap
GATA1 4 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 124 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 169 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 190 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 171 bp overlap
GATA2 2 datasets
ChIP K562 ENCFF544PCK 214 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 221 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 302 bp overlap
ChIP DE DE-GATA4-2 302 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 287 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 302 bp overlap
ChIP DE DE-GATA6-2 302 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 302 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 302 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 302 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 302 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 302 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 302 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 302 bp overlap
ChIP foregut GSE117136.GATA6.foregut 261 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 302 bp overlap
ChIP K562 ENCFF968WBH 302 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 268 bp overlap
ChIP K562 ENCFF744ALD 302 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 284 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 259 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 194 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 291 bp overlap
NCOR1 2 datasets
ChIP K562 ENCFF788MPU 297 bp overlap
ChIP K562 ENCFF866HRM 302 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 237 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 302 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 302 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 302 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 302 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 302 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 295 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 302 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 302 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 230 bp overlap
ChIP K562 ENCFF059YCJ 302 bp overlap
SRF 3 datasets
ChIP K-562 ENCSR582IAO.SRF.K-562 155 bp overlap
ChIP K562 ENCFF766EOO 255 bp overlap
ChIP K562 ENCFF766EOO 212 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 216 bp overlap
TAL1 10 datasets
ChIP K-562 GSE107726.TAL1.K-562 141 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 258 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 206 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 164 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 167 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 143 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 187 bp overlap
ChIP K562 ENCFF620GMX 168 bp overlap
ChIP K562 ENCFF661CCK 276 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 141 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 255 bp overlap
ChIP K562 ENCFF931DJY 302 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 170 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 174 bp overlap
TP53 1 dataset
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 56 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 127 bp overlap