chr2 : 166,336,430 – 166,336,900

470 bp 93 TFs 0 linked genes

This 470 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

93 transcription factors

AR 1 dataset

ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 106 bp overlap

BARHL1 1 dataset

Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap

BARHL2 1 dataset

Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

Bcl11B 1 dataset

Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF680YXW 276 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FOXA1 43 datasets

ChIP 22Rv1 GSE96652.FOXA1.22Rv1 397 bp overlap

ChIP 22Rv1 GSE85558.FOXA1.22Rv1 220 bp overlap

ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 364 bp overlap

ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 279 bp overlap

ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 221 bp overlap

ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 184 bp overlap

ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 281 bp overlap

ChIP 22Rv1_EtOH GSE80742.FOXA1.22Rv1_EtOH 272 bp overlap

ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 286 bp overlap

ChIP A-549 ENCSR000BPX.FOXA1.A-549 177 bp overlap

ChIP A-549 ENCSR000BRD.FOXA1.A-549 147 bp overlap

ChIP A1A3_Brg1KD_Dex GSE112491.FOXA1.A1A3_Brg1KD_Dex 158 bp overlap

Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap

ChIP HepG2 ENCFF207NVJ 97 bp overlap

ChIP HepG2 ENCFF740VZW 285 bp overlap

ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 178 bp overlap

ChIP MCF-7 GSE59530.FOXA1.MCF-7 171 bp overlap

ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 302 bp overlap

ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 191 bp overlap

ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 147 bp overlap

ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 182 bp overlap

ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 269 bp overlap

ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 271 bp overlap

ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 185 bp overlap

ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 363 bp overlap

ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 229 bp overlap

ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 215 bp overlap

ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 233 bp overlap

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 238 bp overlap

ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 244 bp overlap

ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 152 bp overlap

ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 174 bp overlap

ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 189 bp overlap

ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 288 bp overlap

ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 416 bp overlap

ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 289 bp overlap

ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 410 bp overlap

ChIP ZR751 GSE72249.FOXA1.ZR751 354 bp overlap

ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 393 bp overlap

ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 336 bp overlap

ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 184 bp overlap

ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 195 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 228 bp overlap

FOXA2 11 datasets

ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 229 bp overlap

ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 296 bp overlap

ChIP DE DE-FOXA2-1 470 bp overlap

ChIP DE DE-FOXA2-2 437 bp overlap

Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap

ChIP HepG2 ENCFF533COJ 297 bp overlap

ChIP HepG2 ENCFF570ABM 396 bp overlap

ChIP KerCT GSE90454.FOXA2.KerCT 231 bp overlap

ChIP PANC-1 GSE119930.FOXA2.PANC-1 469 bp overlap

ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 190 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 312 bp overlap

FOXA3 2 datasets

Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap

ChIP HepG2 ENCFF005KGL 361 bp overlap

FOXB1 1 dataset

Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXD1 1 dataset

Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap

FOXD3 1 dataset

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

FOXG1 1 dataset

Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap

FOXI1 1 dataset

Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap

FOXK1 1 dataset

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

FOXN3 1 dataset

Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap

FOXO4 1 dataset

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

FOXP1 1 dataset

Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap

FOXP2 1 dataset

Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

FOXP4 1 dataset

Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap

FOXS1 1 dataset

Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap

Foxf1 1 dataset

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap

Foxj3 1 dataset

Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

Foxo1 1 dataset

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA6 1 dataset

Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

HOXB6 1 dataset

Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap

HOXD3 1 dataset

Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap

HOXD8 1 dataset

Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap

Hmx1 1 dataset

Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap

Hmx2 1 dataset

Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 2 datasets

ChIP WA09 GSE105028.NANOG.WA09 415 bp overlap

ChIP hESC GSE18292.NANOG.hESC 108 bp overlap

NFATC3 1 dataset

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

NFATC4 1 dataset

Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap

Nfat5 1 dataset

Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap

Nfatc1 1 dataset

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

Nfatc2 1 dataset

Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

ONECUT1 2 datasets

ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 137 bp overlap

ChIP HepG2 ENCFF243FIR 253 bp overlap

PDX1 1 dataset

ChIP hiPSC GSE125768.PDX1.hiPSC 197 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RUNX2 1 dataset

Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap

Runx1 1 dataset

Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 159 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX14 1 dataset

Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap

SOX18 1 dataset

Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap

SOX21 1 dataset

Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap

SOX4 1 dataset

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

SOX8 1 dataset

Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap

SOX9 1 dataset

Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap

SRY 1 dataset

Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap

STAT3 1 dataset

ChIP BT-474 GSE152203.STAT3.BT-474 186 bp overlap

Sox1 1 dataset

Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Sox5 1 dataset

Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap

TFAP2A 1 dataset

ChIP WA09 GSE105081.TFAP2A.WA09 148 bp overlap

VENTX 1 dataset

Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap

ZBTB32 1 dataset

Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZFP28 1 dataset

ChIP HEK293 GSE76494.ZFP28.HEK293 183 bp overlap

ZNF8 1 dataset

Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap