chr2 : 55,626,227 55,626,607
380 bp 31 TFs 2 linked genes
This 380 bp open chromatin element is linked to PPP4R3B-DT and PPP4R3B and is bound by 31 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PPP4R3B-DT 8.4 kb Proximal Proximity
PPP4R3B 8.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:55,621,227 – 55,631,607
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 210 bp overlap
ChIP K562 ENCFF938UXQ 324 bp overlap
BRD4 1 dataset
ChIP K-562_JQ1_2h GSE99178.BRD4.K-562_JQ1_2h 99 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 203 bp overlap
ChIP K562 ENCFF673OEZ 301 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 122 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 340 bp overlap
EP300 1 dataset
ChIP K562 ENCFF226VMS 227 bp overlap
FOXJ2 1 dataset
ChIP K562 ENCFF457GZC 380 bp overlap
GATA1 8 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 71 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 161 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 164 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 233 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 193 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 169 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 175 bp overlap
ChIP K562 ENCFF094CMK 196 bp overlap
GATA2 5 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 224 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 153 bp overlap
ChIP K562 ENCFF544PCK 215 bp overlap
ChIP K562 ENCFF830LLA 347 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 167 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 284 bp overlap
ChIP DE DE-GATA4-2 320 bp overlap
ChIP foregut GSE117136.GATA4.foregut 249 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 260 bp overlap
ChIP DE DE-GATA6-2 345 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 202 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 284 bp overlap
ChIP foregut GSE117136.GATA6.foregut 207 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 255 bp overlap
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 80 bp overlap
ChIP K562 ENCFF968WBH 334 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 231 bp overlap
ChIP K562 ENCFF055GAZ 259 bp overlap
ChIP K562 ENCFF317JJX 282 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 380 bp overlap
ChIP K562 ENCFF348IBL 298 bp overlap
ChIP K562 ENCFF771OHZ 336 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 210 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 179 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 178 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 119 bp overlap
MTERF4 1 dataset
ChIP HepG2 ENCFF831NAM 136 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 218 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 158 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 210 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF508UTS 153 bp overlap
RFX1 1 dataset
ChIP K-562 ENCSR968GIB.RFX1.K-562 230 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 209 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 174 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 199 bp overlap
SPI1 3 datasets
ChIP K-562 GSE70482.SPI1.K-562 184 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 179 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
TAL1 5 datasets
ChIP K-562 ENCSR000EHB.TAL1.K-562 166 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 173 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 142 bp overlap
ChIP K562 ENCFF661CCK 219 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 117 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 144 bp overlap