Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

28 transcription factors

ARNTL 1 dataset

ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 112 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 101 bp overlap

BCOR 1 dataset

ChIP WA01 GSE104690.BCOR.WA01 161 bp overlap

BRD4 1 dataset

ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 136 bp overlap

FOXA1 20 datasets

ChIP A-549 ENCSR000BPX.FOXA1.A-549 157 bp overlap

ChIP A-549 ENCSR000BRD.FOXA1.A-549 121 bp overlap

ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 172 bp overlap

ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 141 bp overlap

ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 181 bp overlap

ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 74 bp overlap

ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 210 bp overlap

ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 202 bp overlap

ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 202 bp overlap

ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 210 bp overlap

ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 156 bp overlap

ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 193 bp overlap

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 210 bp overlap

ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 173 bp overlap

ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 149 bp overlap

ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 176 bp overlap

ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 174 bp overlap

ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 210 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 172 bp overlap

ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 185 bp overlap

FOXA2 7 datasets

ChIP DE DE-FOXA2-1 210 bp overlap

ChIP DE DE-FOXA2-2 210 bp overlap

ChIP HepG2 ENCFF570ABM 210 bp overlap

ChIP PANC-1 GSE119930.FOXA2.PANC-1 210 bp overlap

ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 210 bp overlap

ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 210 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 210 bp overlap

FOXJ3 1 dataset

ChIP SK-N-SH ENCFF124KVL 144 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-2 210 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 123 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000BNR.HDAC2.WA01 131 bp overlap

HIF1A 2 datasets

ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 149 bp overlap

ChIP U2OS_trough_DMSO GSE85096.HIF1A.U2OS_trough_DMSO 210 bp overlap

JUN 3 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 162 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 168 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 210 bp overlap

KDM1A 1 dataset

ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 83 bp overlap

MED1 1 dataset

ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 182 bp overlap

MYCN 3 datasets

ChIP COG-N-415 GSE138295.MYCN.COG-N-415 210 bp overlap

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 210 bp overlap

ChIP NB-1643 GSE138295.MYCN.NB-1643 155 bp overlap

NANOG 3 datasets

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 210 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 210 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 208 bp overlap

POU5F1 4 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 173 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 210 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 151 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 161 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 133 bp overlap

PRDM1 1 dataset

ChIP HEK293 ENCFF302TBP 210 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 69 bp overlap

RNF2 1 dataset

ChIP K-562 ENCSR820GND.RNF2.K-562 188 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 62 bp overlap

SMARCA4 3 datasets

ChIP K-562 ENCSR643VTW.SMARCA4.K-562 167 bp overlap

ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 210 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 148 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 103 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 210 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 184 bp overlap

TAF1 2 datasets

ChIP H1 ENCFF478SZO 210 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 160 bp overlap

TSHZ2 1 dataset

ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 206 bp overlap

YY1 3 datasets

ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 82 bp overlap

ChIP NT2/D1 ENCFF999MII 164 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 178 bp overlap

Genome Browser