chrY : 3,782,549 – 3,783,079
530 bp 47 TFs 0 linked genes
This 530 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrY:3,777,549 – 3,788,079
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
BCL11A 2 datasets
Motif DE_48h DE_48h-BCL11A_MA2324.1 7 bp overlap
Motif DE_60h DE_60h-BCL11A_MA2324.1 7 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
ERF::FOXI1 1 dataset
Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_60h DE_60h-ETV2FOXI1_MA1942.2 11 bp overlap
Erg 1 dataset
Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_60h DE_60h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 530 bp overlap
ChIP DE DE-FOXA2-2 530 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_60h DE_60h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1ELK1_MA1954.2 13 bp overlap
GATA1::TAL1 2 datasets
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 2 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 530 bp overlap
ChIP DE DE-GATA4-2 530 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
GATA5 2 datasets
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 530 bp overlap
ChIP DE DE-GATA6-2 530 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 314 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 469 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Gata3 2 datasets
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
IKZF1 3 datasets
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
IKZF2 3 datasets
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 358 bp overlap
MYB 2 datasets
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
RBPJ 1 dataset
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Rhox11 1 dataset
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 445 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 516 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 262 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 344 bp overlap
SPIB 3 datasets
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
SPIC 3 datasets
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
Spi1 3 datasets
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
Stat5b 1 dataset
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
TEAD1 1 dataset
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
TRPS1 2 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZNF143 1 dataset
Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap
ZNF281 2 datasets
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF416 1 dataset
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
ZNF528 2 datasets
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap
ZNF75D 1 dataset
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap
ZNF768 2 datasets
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
Zfx 2 datasets
Motif DE_48h DE_48h-Zfx_MA0146.3 10 bp overlap
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap
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