chrY : 2,887,190 – 2,887,700
510 bp 42 TFs 2 linked genes
This 510 bp open chromatin element is linked to ENSG00000290841 and HSFY3P and is bound by 42 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000290841 2.9 kb Proximal Proximity
HSFY3P 3.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrY:2,882,190 – 2,892,700
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ARNT 2 datasets
ChIP 501-mel GSE95280.ARNT.501-mel 203 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 232 bp overlap
BRD4 4 datasets
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 361 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 410 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 308 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 181 bp overlap
CDK7 2 datasets
ChIP Jurkat GSE83777.CDK7.Jurkat 219 bp overlap
ChIP Jurkat_THZ2102 GSE60027.CDK7.Jurkat_THZ2102 51 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 308 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 202 bp overlap
CTCF 1 dataset
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 250 bp overlap
ERF 1 dataset
ChIP HAEC_TNFa_4h GSE89970.ERF.HAEC_TNFa_4h 142 bp overlap
ERG 10 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 193 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 224 bp overlap
ChIP RWPE-1 GSE114241.ERG.RWPE-1 228 bp overlap
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 184 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 189 bp overlap
ChIP aortic-endothelial-cell_D38 GSE139377.ERG.aortic-endothelial-cell_D38 158 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 181 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 223 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 182 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 166 bp overlap
ETV1 1 dataset
ChIP COLO-800 GSE80443.ETV1.COLO-800 234 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 297 bp overlap
GATA2 1 dataset
ChIP SKH1 GSE87283.GATA2.SKH1 254 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 232 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 448 bp overlap
ChIP DE DE-GATA4-2 510 bp overlap
ChIP foregut GSE117136.GATA4.foregut 394 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 446 bp overlap
ChIP DE DE-GATA6-2 510 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 510 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 510 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 510 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 508 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 447 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 510 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 387 bp overlap
ChIP foregut GSE117136.GATA6.foregut 458 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 250 bp overlap
JUN 5 datasets
ChIP DE_D1 S13-DE-d1-JUN-exp1 264 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 333 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 457 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 129 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 113 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 163 bp overlap
MITF 2 datasets
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 196 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 255 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 399 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 369 bp overlap
Msgn1 1 dataset
Motif DE_60h DE_60h-Msgn1_MA1524.3 10 bp overlap
NFIA 1 dataset
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
NR1I2 1 dataset
Motif DE_60h DE_60h-NR1I2_MA1533.2 15 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 352 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 328 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 91 bp overlap
Nrf1 1 dataset
Motif DE_60h DE_60h-Nrf1_MA0506.3 12 bp overlap
PKNOX1 1 dataset
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
RELA 20 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 196 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 299 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 234 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 321 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 254 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 294 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 225 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 340 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 159 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 286 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 322 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 384 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 322 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 194 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 190 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 51 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 102 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 282 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 220 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 253 bp overlap
RUNX1 11 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 310 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 299 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 217 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 112 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 160 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 160 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 217 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 173 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 203 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 199 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 239 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 484 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 452 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 283 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 379 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 442 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 461 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 460 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 61 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 401 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 483 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 163 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 181 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 175 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 158 bp overlap
THRA 1 dataset
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
VDR 1 dataset
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 202 bp overlap
ZNF528 1 dataset
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
Zic1::Zic2 1 dataset
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
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