chrX : 5,631,786 – 5,632,774
988 bp 53 TFs 0 linked genes
This 988 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:5,626,786 – 5,637,774
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
BARHL1 1 dataset
Motif DE_60h DE_60h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_60h DE_60h-BARHL2_MA0635.2 6 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
DUX4 3 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Dux 3 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 500 bp overlap
Elf5 1 dataset
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 582 bp overlap
ChIP DE DE-FOXA2-2 588 bp overlap
FOXD3 1 dataset
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXH1 3 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
Foxj3 1 dataset
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 868 bp overlap
ChIP DE DE-GATA4-2 988 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 628 bp overlap
ChIP DE DE-GATA6-1 269 bp overlap
ChIP DE DE-GATA6-2 967 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 988 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 988 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 988 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 988 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 988 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 564 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 559 bp overlap
Hmx1 3 datasets
Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Motif DE_60h DE_60h-Hmx1_MA0896.2 9 bp overlap
Hmx2 3 datasets
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
Hmx3 3 datasets
Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap
Hoxa13 1 dataset
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 253 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 395 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 381 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 241 bp overlap
Lef1 3 datasets
Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 3 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 344 bp overlap
NR4A2 1 dataset
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
Nanog 3 datasets
Motif DE_36h DE_36h-Nanog_MA2339.1 7 bp overlap
Motif DE_48h DE_48h-Nanog_MA2339.1 7 bp overlap
Motif DE_60h DE_60h-Nanog_MA2339.1 7 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 311 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 436 bp overlap
RBPJ 1 dataset
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
REST 40 datasets
ChIP GM12878 ENCFF235NGC 186 bp overlap
ChIP GM12878 ENCFF943QPB 156 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 519 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 297 bp overlap
ChIP GM23338 ENCFF024TCL 171 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 651 bp overlap
ChIP GP5D GSE51234.REST.GP5D 580 bp overlap
ChIP H1 ENCFF203SWY 319 bp overlap
ChIP H1 ENCFF429RUE 252 bp overlap
ChIP HL-60 ENCFF589LOF 235 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 370 bp overlap
ChIP HeLa-S3 ENCFF911DTC 245 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 226 bp overlap
ChIP Ishikawa ENCFF456OHV 401 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 223 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 246 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 573 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 265 bp overlap
ChIP K-562 GSE70482.REST.K-562 171 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 105 bp overlap
ChIP K562 ENCFF758CZL 641 bp overlap
ChIP MCF-7 ENCFF893RRD 277 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 495 bp overlap
ChIP PFSK-1 ENCFF668WMP 277 bp overlap
ChIP PFSK-1 ENCFF845VHA 321 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 287 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 175 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 169 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 559 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 545 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 304 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 727 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 444 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 526 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 342 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 250 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 176 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 288 bp overlap
ChIP liver ENCSR893QWP.REST.liver 195 bp overlap
ChIP neural ENCSR000BTV.REST.neural 157 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 252 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 277 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 988 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 988 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 988 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 604 bp overlap
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 60 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 732 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 75 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 790 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 699 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 658 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 144 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 236 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 140 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 465 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 221 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 303 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 458 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 71 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 278 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 235 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 537 bp overlap
SP5 3 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Stat5a::Stat5b 3 datasets
Motif DE_36h DE_36h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_48h DE_48h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_60h DE_60h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 3 datasets
Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 272 bp overlap
TCF7 3 datasets
Motif DE_36h DE_36h-TCF7_MA0769.3 7 bp overlap
Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TEAD4 2 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 126 bp overlap
ChIP A549 ENCFF243FTL 277 bp overlap
ZKSCAN1 3 datasets
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 109 bp overlap
ZNF214 3 datasets
Motif DE_36h DE_36h-ZNF214_MA1975.2 13 bp overlap
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap
Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap
ZNF263 3 datasets
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
Motif DE_48h DE_48h-ZNF263_MA0528.3 7 bp overlap
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
ZNF418 1 dataset
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
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