chr20 : 57,711,888 57,712,329
441 bp 42 TFs 2 linked genes
This 441 bp open chromatin element is linked to NKILA and PMEPA1 and is bound by 42 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NKILA 1.7 kb Proximal Proximity
PMEPA1 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:57,706,888 – 57,717,329
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 207 bp overlap
ChIP BT-474_INHHDAC ERP010664.BRD4.BT-474_INHHDAC 440 bp overlap
CDK9 2 datasets
ChIP BT-474 ERP010664.CDK9.BT-474 441 bp overlap
ChIP BT-474_INHHDAC ERP010664.CDK9.BT-474_INHHDAC 441 bp overlap
CTCF 13 datasets
ChIP 22Rv1 ENCFF466OXN 124 bp overlap
ChIP 22Rv1 ENCFF466OXN 324 bp overlap
ChIP A549 ENCFF669BWC 79 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 127 bp overlap
ChIP PC-3 ENCFF487TUI 190 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 145 bp overlap
ChIP RWPE2 ENCFF911IEE 92 bp overlap
ChIP RWPE2 ENCFF911IEE 119 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 60 bp overlap
ChIP VCaP ENCFF858YQT 278 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 157 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 113 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 133 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 297 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 348 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 173 bp overlap
ESR1 11 datasets
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 351 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 248 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 136 bp overlap
ChIP MCF-7_vehicle_45min_H2 GSE99626.ESR1.MCF-7_vehicle_45min_H2 247 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 87 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 277 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 259 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 305 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 180 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 335 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 441 bp overlap
ESRRA 3 datasets
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 305 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 388 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 441 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 158 bp overlap
EZH2 3 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 237 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 348 bp overlap
ChIP HepG2 ENCFF912EIW 441 bp overlap
FOXA1 8 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 370 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 277 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 348 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 337 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 441 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 199 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 103 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 234 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 304 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 388 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 266 bp overlap
ChIP DE DE-FOXA2-1 437 bp overlap
ChIP DE DE-FOXA2-2 439 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 401 bp overlap
ChIP DE DE-GATA6-2 374 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 283 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 201 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 256 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 344 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 266 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 115 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 147 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 331 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 249 bp overlap
PGR 3 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 93 bp overlap
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 201 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 212 bp overlap
RBM25 2 datasets
ChIP K562 ENCFF248CGR 110 bp overlap
ChIP K562 ENCFF957ORK 110 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 331 bp overlap
SMAD2 4 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 183 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 184 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 349 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 240 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 184 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 441 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 374 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 441 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 441 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 441 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 432 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 190 bp overlap
SMAD3 2 datasets
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 327 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 209 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 172 bp overlap
SMARCA4 4 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 355 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 313 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 52 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 441 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 107 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 441 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 426 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 160 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 132 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 260 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 53 bp overlap
VDR 1 dataset
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 94 bp overlap
YY1 1 dataset
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 58 bp overlap
ZNF207 1 dataset
ChIP MCF-7 ENCFF113YEY 139 bp overlap