chr1 : 24,713,638 24,714,105
467 bp 23 TFs 6 linked genes
This 467 bp open chromatin element is linked to 6 target genes and is bound by 23 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
CLIC4 31.5 kb Distal Multiome
SRRM1 70.7 kb Distal Multiome
RCAN3 211.0 kb Distal Multiome
NCMAP-DT 211.5 kb Distal Multiome
NIPAL3 298.1 kb Distal Multiome
STPG1 300.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:24,708,638 – 24,719,105
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
ARID1A 3 datasets
ChIP 12Z GSE129781.ARID1A.12Z 176 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 57 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 81 bp overlap
BRD2 4 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 160 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 61 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 150 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 150 bp overlap
BRD4 6 datasets
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 207 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 144 bp overlap
ChIP LPS141 GSE111253.BRD4.LPS141 435 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 467 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 124 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 124 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 162 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 164 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 369 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 124 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 233 bp overlap
ESR1 2 datasets
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 151 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 167 bp overlap
GATA2 1 dataset
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 149 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 377 bp overlap
ChIP DE DE-GATA4-2 370 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 371 bp overlap
ChIP DE DE-GATA6-2 387 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 367 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 374 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 297 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 416 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 427 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 376 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 349 bp overlap
JUN 2 datasets
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 169 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 222 bp overlap
MED1 5 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 291 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 191 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 154 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 115 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 70 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 268 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 271 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 86 bp overlap
NR3C1 4 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 63 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 140 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 68 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 87 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 342 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 134 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 141 bp overlap
STAG1 1 dataset
ChIP K562 ENCFF674HJF 265 bp overlap
ZFX 4 datasets
ChIP HCT-116 ENCSR503GVO.ZFX.HCT-116 467 bp overlap
ChIP HCT-116 GSE102616.ZFX.HCT-116 467 bp overlap
ChIP HCT116 ENCFF324IZY 467 bp overlap
ChIP HepG2 ENCFF016NZF 467 bp overlap