Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be active in membrane. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for NIPAL3. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = NIPAL3 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of NIPAL3, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:24,150,246–24,151,570 | 265.1 kb | Distal (>10kb) Multiome | 480 | |
| chr1:24,186,980–24,187,928 | 228.4 kb | Distal (>10kb) Multiome | 546 | |
| chr1:24,321,723–24,322,705 | 93.5 kb | Distal (>10kb) Multiome | 514 | |
| chr1:24,413,280–24,414,095 | 2.1 kb | Proximal (<10kb) Multiome | 627 | |
| chr1:24,415,211–24,416,076 | 199 bp | At TSS Multiome | 686 | |
| chr1:24,502,196–24,503,523 | 87.1 kb | Distal (>10kb) Multiome | 663 | |
| chr1:24,506,950–24,507,727 | 91.4 kb | Distal (>10kb) Multiome | 119 | |
| chr1:24,642,448–24,643,922 | 227.3 kb | Distal (>10kb) Multiome | 942 | |
| chr1:24,705,111–24,705,985 | 289.7 kb | Distal (>10kb) Multiome | 599 | |
| chr1:24,713,638–24,714,105 | 298.1 kb | Distal (>10kb) Multiome | 23 |
Genomic view of the NIPAL3 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.