chr13 : 86,909,156 86,909,729
573 bp 29 TFs 1 linked gene
This 573 bp open chromatin element is linked to LINC00430 and is bound by 29 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00430 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:86,904,156 – 86,914,729
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP A-549 GSE85352.ARNT.A-549 281 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR000DNZ.ATF1.K-562 169 bp overlap
ChIP K562 ENCFF980NSF 251 bp overlap
BACH1 2 datasets
ChIP K-562 ENCSR740NPG.BACH1.K-562 335 bp overlap
ChIP K562 ENCFF419VIM 529 bp overlap
BRD4 4 datasets
ChIP HEK293_sgMYOD GSE129407.BRD4.HEK293_sgMYOD 265 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 292 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 140 bp overlap
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 386 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 186 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 134 bp overlap
CREM 2 datasets
ChIP K-562 ENCSR077DKV.CREM.K-562 206 bp overlap
ChIP K562 ENCFF180STA 301 bp overlap
CTCF 4 datasets
ChIP Peyer's patch ENCFF746TCR 357 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 354 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 183 bp overlap
ChIP endodermal cell ENCFF471YCZ 278 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 152 bp overlap
DIDO1 1 dataset
ChIP K-562 ENCSR167JBG.DIDO1.K-562 375 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 301 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 440 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 495 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 544 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 536 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 526 bp overlap
HOXB13 4 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 199 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 189 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 156 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 320 bp overlap
NR2C1 2 datasets
ChIP K-562 ENCSR178DEG.NR2C1.K-562 362 bp overlap
ChIP K562 ENCFF568JLK 218 bp overlap
NR2C2 1 dataset
ChIP K-562 ENCSR750LYM.NR2C2.K-562 192 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 269 bp overlap
NRF1 9 datasets
ChIP K-562 ENCSR494TDU.NRF1.K-562 466 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 452 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 372 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 244 bp overlap
ChIP K-562_Ab_R157-1-3H1 GSE97661.NRF1.K-562_Ab_R157-1-3H1 176 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 265 bp overlap
ChIP K562 ENCFF130SGK 291 bp overlap
ChIP K562 ENCFF689EWI 476 bp overlap
ChIP K562 ENCFF791UHF 455 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 390 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 193 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 360 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 495 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 399 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 374 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 465 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 322 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 309 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 96 bp overlap
THAP1 2 datasets
ChIP K-562 ENCSR000BNN.THAP1.K-562 148 bp overlap
ChIP K562 ENCFF851EDE 291 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 199 bp overlap
ZFX 2 datasets
ChIP K-562 ENCSR920ASP.ZFX.K-562 205 bp overlap
ChIP K562 ENCFF169LZT 301 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 141 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 321 bp overlap