chr1 : 220,290,178 – 220,290,626

448 bp 46 TFs 0 linked genes

This 448 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

46 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 273 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 248 bp overlap

Arid3a 1 dataset

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

Bach1::Mafk 1 dataset

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

CBX2 1 dataset

ChIP K-562 ENCSR000ATU.CBX2.K-562 260 bp overlap

CDX1 1 dataset

Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap

CDX2 1 dataset

ChIP LS180 GSE31939.CDX2.LS180 136 bp overlap

CHD7 3 datasets

ChIP H1 ENCFF126NLU 446 bp overlap

ChIP H1 ENCFF126NLU 243 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 135 bp overlap

CTCF 1 dataset

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 289 bp overlap

FEZF2 1 dataset

Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

GRHL2 1 dataset

Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

HMBOX1 1 dataset

Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap

HOXA10 1 dataset

Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap

HOXB13 1 dataset

Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap

HOXD9 1 dataset

Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap

Isl1 1 dataset

Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap

Lhx3 1 dataset

Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap

MAFK 1 dataset

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

MEIS1 2 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Mafg 1 dataset

Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 448 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 448 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 448 bp overlap

ChIP hESC GSE18292.NANOG.hESC 342 bp overlap

NKX6-3 1 dataset

Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap

NRIP1 1 dataset

ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap

PGR 1 dataset

Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap

PHOX2B 1 dataset

Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap

POU5F1 7 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 448 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 334 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 342 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 189 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 216 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 448 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 182 bp overlap

PPARG 1 dataset

ChIP SGBS GSE41629.PPARG.SGBS 205 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 412 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 299 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 427 bp overlap

RBBP4 1 dataset

ChIP RH5 GSE155861.RBBP4.RH5 124 bp overlap

RBPJ 2 datasets

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 166 bp overlap

REST 1 dataset

Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap

RNF2 5 datasets

ChIP A-549 ENCSR798EGJ.RNF2.A-549 91 bp overlap

ChIP K-562 ENCSR820GND.RNF2.K-562 448 bp overlap

ChIP K562 ENCFF653BQJ 448 bp overlap

ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 152 bp overlap

ChIP fibroblast GSE139053.RNF2.fibroblast 384 bp overlap

SCRT1 1 dataset

ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 206 bp overlap

SCRT2 2 datasets

Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap

ChIP HEK293 ENCFF711QQB 239 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 282 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 448 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 448 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 420 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 448 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 448 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 448 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 165 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 274 bp overlap

TAL1 1 dataset

ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 142 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap