chr12 : 106,331,629 106,331,942
313 bp 49 TFs 0 linked genes
This 313 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:106,326,629 – 106,336,942
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 211 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 227 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 204 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 217 bp overlap
BRD4 2 datasets
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 313 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 82 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 191 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 198 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 274 bp overlap
FOXA1 1 dataset
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 67 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 67 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 134 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 250 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 313 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 313 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 313 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 313 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 313 bp overlap
ChIP hESC GSE18292.NANOG.hESC 134 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
POLR2A 2 datasets
ChIP Raji ENCFF613VGX 225 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 313 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 188 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 310 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
RBM25 2 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 201 bp overlap
ChIP K562 ENCFF957ORK 167 bp overlap
RBPJ 1 dataset
ChIP MUTUL GSE75503.RBPJ.MUTUL 289 bp overlap
SMAD2 4 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 231 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 313 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 295 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 284 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 116 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 188 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 145 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 274 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 205 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 231 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 186 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 260 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 313 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZMYM3 2 datasets
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 169 bp overlap
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 145 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap