chr1 : 22,741,075 22,741,547
472 bp 33 TFs 3 linked genes
This 472 bp open chromatin element is linked to EPHB2, KDM1A, and ZBTB40 and is bound by 33 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
EPHB2 30.5 kb Distal Multiome
KDM1A 278.2 kb Distal Multiome
ZBTB40 289.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:22,736,075 – 22,746,547
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP NGP GSE134626.ARID1A.NGP 236 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 167 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 72 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 264 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 231 bp overlap
CTCF 11 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H9 ENCFF152GTF 314 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 156 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 157 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 230 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 144 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 104 bp overlap
ChIP endodermal cell ENCFF471YCZ 340 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 194 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 222 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 182 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 179 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 268 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 145 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 408 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 369 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 232 bp overlap
ChIP DE DE-FOXA2-1 330 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 366 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 472 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 347 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 315 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 472 bp overlap
ChIP DE DE-GATA4-2 472 bp overlap
ChIP foregut GSE117136.GATA4.foregut 472 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 472 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 417 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 472 bp overlap
ChIP DE DE-GATA6-2 472 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 472 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 472 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 472 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 472 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 472 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 472 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 472 bp overlap
ChIP foregut GSE117136.GATA6.foregut 472 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 472 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 367 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 472 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 334 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 472 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 179 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 379 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 203 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 59 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 160 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 472 bp overlap
NELFE 2 datasets
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 120 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 178 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 159 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 274 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 472 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 472 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 369 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 395 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 472 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 472 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 202 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 325 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 187 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 189 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 408 bp overlap
SUZ12 1 dataset
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 203 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 288 bp overlap
TAL1 1 dataset
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 151 bp overlap
ZKSCAN1 2 datasets
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 183 bp overlap
ChIP K562 ENCFF977CBA 221 bp overlap