chr12 : 32,493,295 – 32,493,645
350 bp 38 TFs 1 linked gene
This 350 bp open chromatin element is linked to FGD4 and is bound by 38 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FGD4 8.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:32,488,295 – 32,498,645
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 179 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 116 bp overlap
BCL6 3 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 347 bp overlap
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 154 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 159 bp overlap
CTCF 1 dataset
ChIP islet GSE23784.CTCF.islet 155 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 301 bp overlap
ESR1 32 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 322 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 125 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 200 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 263 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 350 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 350 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 350 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 259 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 126 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 327 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 350 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 252 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 350 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 232 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 350 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 350 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 350 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 350 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 350 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 350 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 350 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 339 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 338 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 288 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 312 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 208 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 350 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 317 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 301 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 242 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 148 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 237 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 350 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 309 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 181 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 276 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 315 bp overlap
ChIP DE DE-FOXA2-2 212 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 210 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 258 bp overlap
ChIP DE DE-GATA4-2 284 bp overlap
ChIP foregut GSE117136.GATA4.foregut 268 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 350 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 350 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 211 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 342 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 261 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 350 bp overlap
HNRNPUL1 1 dataset
ChIP K-562 ENCSR296MXW.HNRNPUL1.K-562 157 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 167 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 270 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 135 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 217 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 257 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 242 bp overlap
NCOR1 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR1.OCI-Ly1 222 bp overlap
NCOR2 1 dataset
ChIP OCI-Ly1 GSE29282.NCOR2.OCI-Ly1 192 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 350 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 54 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 280 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 166 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 264 bp overlap
PDX1 4 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 324 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 212 bp overlap
ChIP islet ERP001456.PDX1.islet 328 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 350 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 294 bp overlap
RELA 1 dataset
ChIP BJAB GSE117250.RELA.BJAB 140 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 189 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 350 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 341 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 233 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 343 bp overlap
SMARCA4 1 dataset
ChIP NSC GSE125033.SMARCA4.NSC 339 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE67282.SOX2.hiPSC 202 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 246 bp overlap
TEAD1 1 dataset
ChIP CCLP1 GSE62272.TEAD1.CCLP1 143 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 263 bp overlap
ZNF143 3 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 242 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 270 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 166 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 170 bp overlap
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