Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

44 transcription factors

BRD4 2 datasets

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 137 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 361 bp overlap

CRX 3 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 242 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 284 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 346 bp overlap

CTCF 1 dataset

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 299 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF031ISE 121 bp overlap

Crx 1 dataset

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

Ddit3::Cebpa 1 dataset

Motif DE_60h DE_60h-Ddit3Cebpa_MA0019.2 10 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 202 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 269 bp overlap

ChIP neural cell ENCFF442QNK 494 bp overlap

ESR1 2 datasets

ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 224 bp overlap

ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 76 bp overlap

EZH2 1 dataset

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 328 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 333 bp overlap

ChIP DE DE-FOXA2-2 326 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 418 bp overlap

ChIP DE DE-GATA4-2 454 bp overlap

GATA6 6 datasets

ChIP DE DE-GATA6-1 403 bp overlap

ChIP DE DE-GATA6-2 522 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 460 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 427 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 303 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 489 bp overlap

GSC 1 dataset

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

HAND2 1 dataset

ChIP Kelly GSE94822.HAND2.Kelly 148 bp overlap

MAF::NFE2 1 dataset

Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap

MAX 1 dataset

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 53 bp overlap

MEF2D 2 datasets

ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 260 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 272 bp overlap

MZF1 1 dataset

Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap

NEUROD1 1 dataset

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 237 bp overlap

NRL 1 dataset

ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 220 bp overlap

Nfe2l2 1 dataset

Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap

Nr2e1 1 dataset

Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap

OTX1 1 dataset

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 417 bp overlap

PHOX2A 1 dataset

Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap

PITX1 1 dataset

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

RAD21 1 dataset

ChIP neural ENCSR198ZYJ.RAD21.neural 255 bp overlap

RHOXF1 1 dataset

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 344 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 237 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 533 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 435 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 317 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 485 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 445 bp overlap

SMAD3 1 dataset

ChIP endoderm GSE29422.SMAD3.endoderm 173 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 211 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 236 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 531 bp overlap

ZNF317 1 dataset

Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap

ZNF534 1 dataset

ChIP HEK293T GSE78099.ZNF534.HEK293T 212 bp overlap

Zic2 1 dataset

Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap

Genome Browser