chr1 : 187,853,411 187,853,861
450 bp 30 TFs 0 linked genes
This 450 bp open chromatin element has no linked target genes and is bound by 30 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:187,848,411 – 187,858,861
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 184 bp overlap
BRD4 6 datasets
ChIP BE2C GSE80151.BRD4.BE2C 450 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 317 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 429 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 450 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 450 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 274 bp overlap
CDK9 2 datasets
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 367 bp overlap
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 281 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 307 bp overlap
ESR1 3 datasets
ChIP MCF-7 GSE68356.ESR1.MCF-7 211 bp overlap
ChIP MCF-7 GSE35109.ESR1.MCF-7 107 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 113 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 238 bp overlap
ChIP DE DE-FOXA2-1 268 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 374 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 372 bp overlap
ChIP SK-N-SH ENCFF764OZD 355 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 266 bp overlap
GATA3 8 datasets
ChIP BE2C GSE65664.GATA3.BE2C 289 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 342 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 337 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 298 bp overlap
ChIP SH-SY5Y ENCFF475HYF 385 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 411 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 232 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 278 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 320 bp overlap
ChIP DE DE-GATA4-2 333 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 301 bp overlap
ChIP DE DE-GATA6-2 311 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 284 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 319 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 171 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 370 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 328 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 275 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 315 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 376 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 426 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 377 bp overlap
HMGA1 1 dataset
ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 93 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 54 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 371 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 402 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 374 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 450 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 116 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 450 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 275 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 450 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 265 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 351 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 200 bp overlap
RUNX1 1 dataset
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 189 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 112 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 217 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 401 bp overlap
STAT3 1 dataset
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 195 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 367 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 275 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 363 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 363 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 339 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 339 bp overlap