chr1 : 184,434,215 184,434,506
291 bp 32 TFs 0 linked genes
This 291 bp open chromatin element has no linked target genes and is bound by 32 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:184,429,215 – 184,439,506
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 186 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 141 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 291 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 291 bp overlap
BRD4 4 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 291 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 251 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 291 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 291 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 291 bp overlap
ChIP neural cell ENCFF442QNK 289 bp overlap
FOXA1 9 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 71 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 115 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 175 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 106 bp overlap
ChIP HepG2 ENCFF207NVJ 93 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 170 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 179 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 135 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 55 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 203 bp overlap
ChIP DE DE-FOXA2-2 224 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 274 bp overlap
HOXB13 1 dataset
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 81 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 203 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NKX2-1 2 datasets
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 161 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 143 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Nkx2-1 1 dataset
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 184 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 245 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 142 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 291 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 291 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 291 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 221 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 291 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 227 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 151 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 138 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 134 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap