chr9 : 120,528,894 120,529,093
199 bp 23 TFs 1 linked gene
This 199 bp open chromatin element is linked to CDK5RAP2 and is bound by 23 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CDK5RAP2 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:120,523,894 – 120,534,093
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 152 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 199 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 148 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 199 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 118 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 110 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 199 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 199 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 199 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 84 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 199 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 185 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 199 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 199 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 199 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 199 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 199 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 185 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 135 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 162 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 199 bp overlap
SOX2 2 datasets
ChIP H9 GSE46837.SOX2.H9 155 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 175 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 199 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 199 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 199 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 198 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 199 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 84 bp overlap