chr9 : 97,848,150 – 97,848,304
154 bp 22 TFs 1 linked gene
This 154 bp open chromatin element is linked to FOXE1 and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FOXE1 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:97,843,150 – 97,853,304
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP MCF-7_shJUN GSE128445.ARID1B.MCF-7_shJUN 77 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 154 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 154 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 154 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 154 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 154 bp overlap
CTCF 181 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 115 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 154 bp overlap
ChIP AG04449 ENCFF248MBD 140 bp overlap
ChIP AG04450 ENCFF116DJL 154 bp overlap
ChIP AG10803 ENCFF549AQK 150 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 154 bp overlap
ChIP BJ ENCFF434HEC 154 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 154 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 154 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 120 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 154 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 154 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 154 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 154 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 139 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 154 bp overlap
ChIP GM12864 ENCFF357DQE 154 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 101 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 93 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 149 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 123 bp overlap
ChIP GM12873 ENCFF711LOS 154 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 114 bp overlap
ChIP GM12875 ENCFF081UCQ 154 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 93 bp overlap
ChIP GM23338 ENCFF531QOI 154 bp overlap
ChIP GM23338 ENCFF772DML 154 bp overlap
ChIP H1 ENCFF764RHO 98 bp overlap
ChIP H9 ENCFF152GTF 154 bp overlap
ChIP H9 ENCFF152GTF 75 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 90 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 154 bp overlap
ChIP HFF ENCSR000DUM.CTCF.HFF 153 bp overlap
ChIP HFF-Myc ENCFF680WYR 154 bp overlap
ChIP HFFc6 ENCFF005CJI 154 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 111 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 51 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 130 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 154 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 154 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 154 bp overlap
ChIP IMR-90 ENCFF887MRH 154 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 116 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 71 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 98 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 152 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 154 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 140 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 154 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 154 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 119 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 154 bp overlap
ChIP RWPE2 ENCFF911IEE 149 bp overlap
ChIP SK-N-SH ENCFF575DMG 151 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 154 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 121 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 124 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 88 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 154 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 54 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 154 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 127 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 154 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 154 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 154 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 154 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 154 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 130 bp overlap
ChIP astrocyte ENCFF042YJV 154 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 154 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 154 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 154 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 154 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 154 bp overlap
ChIP body of pancreas ENCFF269EDN 154 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 154 bp overlap
ChIP brain ENCFF685VRG 154 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 154 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 154 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 154 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 154 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 127 bp overlap
ChIP chondrocyte ENCFF134ORZ 154 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 101 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 154 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 154 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 154 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 154 bp overlap
ChIP endodermal cell ENCFF471YCZ 154 bp overlap
ChIP endodermal cell ENCFF471YCZ 83 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 154 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 154 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 154 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 108 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 154 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 154 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 148 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 110 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 154 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 154 bp overlap
ChIP fibroblast of lung ENCFF084DUH 154 bp overlap
ChIP fibroblast of lung ENCFF356FDN 154 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 154 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 147 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 78 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 154 bp overlap
ChIP fibroblast_DERMAL ENCSR000APM.CTCF.fibroblast_DERMAL 124 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 154 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 133 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 110 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 154 bp overlap
ChIP fibroblast_LUNG ENCSR000ANO.CTCF.fibroblast_LUNG 154 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 136 bp overlap
ChIP fibroblast_LUNG ENCSR000DVA.CTCF.fibroblast_LUNG 101 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 147 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 117 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 139 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 82 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 154 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 154 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 154 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 154 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 154 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 154 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 154 bp overlap
ChIP hepatocyte ENCFF263BLJ 154 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 154 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 99 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 138 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 117 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 154 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 154 bp overlap
ChIP islet ERP004003.CTCF.islet 154 bp overlap
ChIP keratinocyte ENCFF667ULX 154 bp overlap
ChIP keratinocyte ENCFF805QIE 154 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 154 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 154 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 125 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 154 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 154 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 154 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 152 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 154 bp overlap
ChIP myotube ENCFF981UHL 154 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 154 bp overlap
ChIP nephron ENCFF972IQB 154 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 154 bp overlap
ChIP neural cell ENCFF335ADI 154 bp overlap
ChIP neural crest cell ENCFF182LWK 154 bp overlap
ChIP neural progenitor cell ENCFF420RBO 154 bp overlap
ChIP neural progenitor cell ENCFF581WPG 154 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 154 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 154 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 154 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 149 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 154 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 154 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 154 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 143 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 154 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 154 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 154 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 154 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 154 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 154 bp overlap
ChIP testis ENCSR981CID.CTCF.testis 62 bp overlap
ChIP thyroid gland ENCFF163TUI 153 bp overlap
ChIP thyroid gland ENCFF163TUI 154 bp overlap
ChIP thyroid gland ENCFF204HWS 154 bp overlap
ChIP thyroid gland ENCFF300RYK 154 bp overlap
ChIP thyroid gland ENCFF631QRY 154 bp overlap
ChIP thyroid gland ENCFF748ICQ 154 bp overlap
ChIP thyroid gland ENCFF905YHF 154 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 154 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 154 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 154 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 154 bp overlap
ChIP thyroid-gland ENCSR744YJR.CTCF.thyroid-gland 154 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 154 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 79 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 65 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 83 bp overlap
EZH2 30 datasets
ChIP A673 ENCFF790MVL 154 bp overlap
ChIP A673 ENCFF955JRZ 154 bp overlap
ChIP B cell ENCFF803EMO 154 bp overlap
ChIP B cell ENCFF803EMO 135 bp overlap
ChIP GM12878 ENCFF635TDF 144 bp overlap
ChIP GM23248 ENCFF404ZHM 121 bp overlap
ChIP GM23248 ENCFF506FWX 154 bp overlap
ChIP GM23338 ENCFF613YON 154 bp overlap
ChIP GM23338 ENCFF886DXX 154 bp overlap
ChIP H1 ENCFF232NZA 154 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 154 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 154 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 154 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 154 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 119 bp overlap
ChIP K-562 ENCSR000AQE.EZH2.K-562 105 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 154 bp overlap
ChIP T98G GSE112240.EZH2.T98G 61 bp overlap
ChIP astrocyte ENCFF365JTP 154 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 154 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 154 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 154 bp overlap
ChIP hepatocyte ENCFF118DKH 84 bp overlap
ChIP hepatocyte ENCFF552DZB 127 bp overlap
ChIP keratinocyte ENCFF070STK 154 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 154 bp overlap
ChIP neural progenitor cell ENCFF018MKA 154 bp overlap
ChIP neural progenitor cell ENCFF472NFV 154 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 89 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 111 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 152 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 151 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 111 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 93 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 114 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 154 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 126 bp overlap
ChIP hESC GSE18292.NANOG.hESC 84 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 69 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 154 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 106 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 154 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 154 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 88 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 154 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 154 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 105 bp overlap
SUZ12 8 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 154 bp overlap
ChIP H1 ENCFF881NFR 154 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 154 bp overlap
ChIP K562 ENCFF397TBJ 154 bp overlap
ChIP K562 ENCFF397TBJ 154 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 58 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 154 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 154 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 153 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 154 bp overlap
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