chr9 : 42,283,034 42,283,439
405 bp 59 TFs 0 linked genes
This 405 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:42,278,034 – 42,288,439
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
ATF2 1 dataset
Motif DE_48h DE_48h-ATF2_MA1632.2 10 bp overlap
ATF4 1 dataset
Motif DE_48h DE_48h-ATF4_MA0833.3 10 bp overlap
Ascl2 1 dataset
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CEBPG 1 dataset
Motif DE_48h DE_48h-CEBPG_MA1636.2 10 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Dux 1 dataset
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
Motif DE_48h DE_48h-FOS_MA0476.2 8 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 309 bp overlap
ChIP DE DE-GATA6-2 313 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 371 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
HES6 1 dataset
Motif DE_48h DE_48h-HES6_MA1493.1 10 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
JUN 1 dataset
Motif DE_48h DE_48h-JUN_MA0488.2 10 bp overlap
JUND 1 dataset
Motif DE_48h DE_48h-JUND_MA0492.2 11 bp overlap
Jun 1 dataset
Motif DE_48h DE_48h-Jun_MA0489.3 8 bp overlap
KLF5 1 dataset
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
MSC 1 dataset
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
PHOX2A 1 dataset
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 240 bp overlap
PROP1 1 dataset
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Ptf1A 1 dataset
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 325 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 371 bp overlap
SNAI1 1 dataset
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 301 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 302 bp overlap
SP5 1 dataset
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
TCF12 1 dataset
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_48h DE_48h-TCF4_MA0830.3 8 bp overlap
Tbx6 1 dataset
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Zfp335 1 dataset
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap