chr8 : 136,532,666 – 136,533,194
528 bp 45 TFs 1 linked gene
This 528 bp open chromatin element is linked to LINC02055 and is bound by 45 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02055 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:136,527,666 – 136,538,194
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 241 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 91 bp overlap
BHLHE22 1 dataset
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 101 bp overlap
Bhlha15 1 dataset
Motif DE_48h DE_48h-Bhlha15_MA1472.3 8 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 187 bp overlap
CTCF 37 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 219 bp overlap
ChIP C4-2B ENCFF821XVN 525 bp overlap
ChIP C4-2B ENCFF821XVN 528 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 172 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 185 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 141 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 106 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 82 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 168 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 149 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 183 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 183 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 129 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 244 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 203 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 233 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 126 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 110 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 219 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 155 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 102 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 144 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 153 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 102 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 124 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 156 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 113 bp overlap
ChIP KMS-11_NSD2-Low GSE131651.CTCF.KMS-11_NSD2-Low 126 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 306 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 178 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 201 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 201 bp overlap
ChIP U2OS_interphase GSE141081.CTCF.U2OS_interphase 143 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 206 bp overlap
ChIP endodermal cell ENCFF471YCZ 288 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 181 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 180 bp overlap
CTCFL 2 datasets
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 171 bp overlap
ChIP delta-47 GSE70764.CTCFL.delta-47 222 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 137 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 118 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 375 bp overlap
ChIP DE DE-FOXA2-1 528 bp overlap
ChIP DE DE-FOXA2-2 528 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 528 bp overlap
ChIP DE DE-GATA4-2 528 bp overlap
ChIP foregut GSE117136.GATA4.foregut 419 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 528 bp overlap
ChIP DE DE-GATA6-2 528 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 380 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 528 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 399 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 528 bp overlap
Gli1 1 dataset
Motif DE_48h DE_48h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_48h DE_48h-Gli2_MA0734.4 9 bp overlap
HIC2 1 dataset
Motif DE_48h DE_48h-HIC2_MA0738.2 6 bp overlap
MYF5 1 dataset
Motif DE_48h DE_48h-MYF5_MA1641.2 8 bp overlap
NEUROD1 1 dataset
Motif DE_48h DE_48h-NEUROD1_MA1109.2 8 bp overlap
NHLH2 1 dataset
Motif DE_48h DE_48h-NHLH2_MA1529.2 16 bp overlap
Neurod2 2 datasets
Motif DE_48h DE_48h-Neurod2_MA0668.3 8 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 1 dataset
Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 1 dataset
Motif DE_48h DE_48h-Ptf1A_MA1619.2 8 bp overlap
RAD21 1 dataset
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 116 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 272 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 426 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 397 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 214 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 214 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 214 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 256 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 151 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 195 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 195 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 79 bp overlap
TBP 1 dataset
Motif DE_48h DE_48h-TBP_MA0108.3 7 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 178 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR637QAM.TRIM22.GM12878 167 bp overlap
Tcf12 1 dataset
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
ZBTB18 1 dataset
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
ZNF157 1 dataset
Motif DE_48h DE_48h-ZNF157_MA2331.1 21 bp overlap
ZNF211 1 dataset
Motif DE_48h DE_48h-ZNF211_MA1974.2 10 bp overlap
ZNF8 1 dataset
Motif DE_48h DE_48h-ZNF8_MA1718.1 20 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
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