chr7 : 127,593,567 127,593,956
389 bp 36 TFs 3 linked genes
This 389 bp open chromatin element is linked to FSCN3, ARF5, and GCC1 and is bound by 36 transcription factors.
Linked Genes
3 genes
Distance
Gene Expression Dist. to TSS Distance Link type
FSCN3 at TSS At TSS Proximity
ARF5 5.2 kb Proximal Proximity
GCC1 8.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:127,588,567 – 127,598,956
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 232 bp overlap
CTCF 3 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 300 bp overlap
ChIP body of pancreas ENCFF881RGF 281 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 151 bp overlap
GABPA 1 dataset
ChIP K-562 ENCSR000BLO.GABPA.K-562 133 bp overlap
GATA6 1 dataset
ChIP PATU8988 GSE47535.GATA6.PATU8988 175 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF354NRH 289 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 185 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 166 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 264 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 68 bp overlap
KDM5B 1 dataset
ChIP K-562 ENCSR000AQA.KDM5B.K-562 123 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 215 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 85 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 79 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 232 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 295 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 252 bp overlap
POLR2A 6 datasets
ChIP body of pancreas ENCFF084VJR 295 bp overlap
ChIP body of pancreas ENCFF501FEC 207 bp overlap
ChIP body of pancreas ENCFF675RCN 195 bp overlap
ChIP body of pancreas ENCFF727UBE 212 bp overlap
ChIP spleen ENCFF446ZGT 290 bp overlap
ChIP spleen ENCFF706IUS 389 bp overlap
POLR2G 3 datasets
ChIP K562 ENCFF047BLG 314 bp overlap
ChIP K562 ENCFF047BLG 54 bp overlap
ChIP K562 ENCFF648YPL 53 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 325 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 345 bp overlap
RAD21 1 dataset
ChIP liver ENCFF522JHE 228 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 389 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 389 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 211 bp overlap
REST 1 dataset
ChIP CD4 GSE49570.REST.CD4 152 bp overlap
RFX5 4 datasets
ChIP Hep-G2 ENCSR000EEA.RFX5.Hep-G2 91 bp overlap
ChIP HepG2 ENCFF065UQI 126 bp overlap
ChIP MCF-7 ENCFF983ILY 64 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 119 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 370 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 322 bp overlap
SMAD3 3 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 71 bp overlap
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 123 bp overlap
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 170 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 327 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 180 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 242 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 355 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 151 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 377 bp overlap
ZNF449 2 datasets
ChIP HEK293 ENCFF764ZIC 199 bp overlap
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 140 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 87 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 97 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 135 bp overlap