chr7 : 27,094,336 27,094,532
196 bp 29 TFs 3 linked genes
This 196 bp open chromatin element is linked to HOXA1, HOTAIRM1, and ENSG00000276528 and is bound by 29 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
HOXA1 1.5 kb Proximal Proximity
HOTAIRM1 1.6 kb Proximal Proximity
ENSG00000276528 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:27,089,336 – 27,099,532
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 196 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 174 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 113 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 75 bp overlap
BRD4 2 datasets
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 196 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 196 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 196 bp overlap
ChIP H1 ENCFF095JHA 100 bp overlap
ESR1 1 dataset
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 75 bp overlap
EZH2 8 datasets
ChIP GM23338 ENCFF613YON 196 bp overlap
ChIP H1 ENCFF232NZA 196 bp overlap
ChIP H1 ENCFF232NZA 196 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 131 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 51 bp overlap
ChIP neural progenitor cell ENCFF018MKA 196 bp overlap
ChIP neural progenitor cell ENCFF472NFV 196 bp overlap
ChIP neural progenitor cell ENCFF472NFV 196 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 150 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 137 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 122 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 196 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 196 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 196 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 173 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 196 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 196 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 174 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 180 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 170 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 196 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 95 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 55 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 146 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 153 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 196 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 196 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 58 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 196 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 196 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 196 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 196 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 196 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 196 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 196 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 196 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 149 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 135 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 196 bp overlap
SUZ12 4 datasets
ChIP H1 ENCFF881NFR 196 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 196 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 196 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 127 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 98 bp overlap
YY1 1 dataset
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 155 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 187 bp overlap