chr1 : 113,999,654 114,000,118
464 bp 40 TFs 3 linked genes
This 464 bp open chromatin element is linked to HIPK1, RSBN1, and PHTF1 and is bound by 40 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
HIPK1 70.2 kb Distal Multiome
RSBN1 187.6 kb Distal Multiome
PHTF1 240.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:113,994,654 – 114,005,118
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 273 bp overlap
ASCL1 4 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 123 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 226 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 122 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 126 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 191 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 187 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 159 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 289 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 278 bp overlap
ESR1 2 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 148 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 173 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 223 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 239 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 271 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 464 bp overlap
ChIP DE DE-FOXA2-2 464 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 270 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 426 bp overlap
ChIP DE DE-GATA4-2 422 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 209 bp overlap
ChIP foregut GSE117136.GATA4.foregut 371 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 384 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 369 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 458 bp overlap
ChIP DE DE-GATA6-2 464 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 463 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 399 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 464 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 400 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 454 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 352 bp overlap
ChIP foregut GSE117136.GATA6.foregut 366 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 387 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 310 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 284 bp overlap
GFI1B 1 dataset
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 226 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 224 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 326 bp overlap
ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 241 bp overlap
KDM1A 3 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 283 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 311 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 408 bp overlap
KLF9 1 dataset
ChIP MCF-7 ENCFF618FCM 302 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 231 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCFF179YRV 267 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 357 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 298 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 195 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 119 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 190 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 399 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 282 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 206 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 246 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 220 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 197 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 411 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 386 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 389 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 332 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 382 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 322 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 355 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 263 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 179 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 291 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 249 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 353 bp overlap
SPI1 1 dataset
ChIP HL-60 ENCFF645GBT 88 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 175 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 245 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 317 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 288 bp overlap