chr6 : 39,117,239 39,117,843
604 bp 28 TFs 2 linked genes
This 604 bp open chromatin element is linked to SAYSD1 and KCNK5 and is bound by 28 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
SAYSD1 2.1 kb Proximal Proximity
KCNK5 112.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:39,112,239 – 39,122,843
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 292 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 309 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 369 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 210 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 237 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 290 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 246 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 152 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 449 bp overlap
ChIP DE DE-FOXA2-2 425 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 341 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 531 bp overlap
ChIP DE DE-GATA4-2 549 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 604 bp overlap
ChIP DE DE-GATA6-2 568 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 357 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 451 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 419 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 507 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 451 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 526 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 165 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 201 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 174 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 292 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 253 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 211 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 374 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 227 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 266 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 94 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 229 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 231 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 329 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 335 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 162 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 604 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 604 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 301 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 245 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 500 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 313 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 588 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 525 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 328 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 436 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 205 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 446 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 159 bp overlap