chr6 : 12,439,204 12,439,754
550 bp 76 TFs 0 linked genes
This 550 bp open chromatin element has no linked target genes and is bound by 76 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:12,434,204 – 12,444,754
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ATF6 1 dataset
Motif DE_36h DE_36h-ATF6_MA1466.2 13 bp overlap
BCL6B 1 dataset
Motif DE_36h DE_36h-BCL6B_MA0731.1 17 bp overlap
Bcl11B 1 dataset
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 509 bp overlap
CTCF 1 dataset
ChIP foreskin keratinocyte ENCFF980OWR 223 bp overlap
DPRX 1 dataset
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 492 bp overlap
ERF::SREBF2 2 datasets
Motif DE_36h DE_36h-ERFSREBF2_MA1939.2 16 bp overlap
Motif DE_36h DE_36h-ERFSREBF2_MA1939.2 16 bp overlap
FOXA2 1 dataset
ChIP KerCT GSE90454.FOXA2.KerCT 251 bp overlap
FOXE1 1 dataset
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
GATA1 1 dataset
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 459 bp overlap
ChIP DE DE-GATA4-2 513 bp overlap
ChIP foregut GSE117136.GATA4.foregut 259 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 423 bp overlap
ChIP DE DE-GATA6-2 549 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 306 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 432 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 274 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 550 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 437 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 378 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 406 bp overlap
HAND2 1 dataset
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Hand1 1 dataset
Motif DE_36h DE_36h-Hand1_MA2123.1 9 bp overlap
Hmx1 1 dataset
Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap
LIN54 1 dataset
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
MAFF 1 dataset
Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap
MEIS1 5 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap
MXI1 1 dataset
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
MYF5 1 dataset
Motif DE_36h DE_36h-MYF5_MA1641.2 8 bp overlap
MYOD1 1 dataset
Motif DE_36h DE_36h-MYOD1_MA0499.3 9 bp overlap
Mafb 1 dataset
Motif DE_36h DE_36h-Mafb_MA0117.3 11 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NFIX 1 dataset
Motif DE_36h DE_36h-NFIX_MA1528.2 14 bp overlap
NKX6-3 1 dataset
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
NRL 1 dataset
Motif DE_36h DE_36h-NRL_MA0842.3 12 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 550 bp overlap
Neurod2 2 datasets
Motif DE_36h DE_36h-Neurod2_MA0668.3 8 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
POU2F1 1 dataset
Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap
POU3F4 1 dataset
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
Ptf1A 1 dataset
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
RFX1 2 datasets
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
RFX2 2 datasets
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
RFX3 2 datasets
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
RFX5 2 datasets
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
RUNX2 1 dataset
Motif DE_36h DE_36h-RUNX2_MA0511.2 9 bp overlap
Rhox11 1 dataset
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Runx1 1 dataset
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMAD2 1 dataset
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 447 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 362 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 410 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 226 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 213 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 307 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 224 bp overlap
STAT3 1 dataset
Motif DE_36h DE_36h-STAT3_MA0144.3 9 bp overlap
TFAP4 2 datasets
Motif DE_36h DE_36h-TFAP4_MA1570.1 10 bp overlap
Motif DE_36h DE_36h-TFAP4_MA1570.1 10 bp overlap
TFEB 1 dataset
Motif DE_36h DE_36h-TFEB_MA0692.2 8 bp overlap
TP53 3 datasets
Motif DE_36h DE_36h-TP53_MA0106.3 18 bp overlap
Motif DE_36h DE_36h-TP53_MA0106.3 18 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 170 bp overlap
TP63 13 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 364 bp overlap
Motif DE_36h DE_36h-TP63_MA0525.2 18 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 305 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 550 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 215 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 245 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 252 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 355 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 357 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 323 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 326 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 303 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 194 bp overlap
TP73 2 datasets
Motif DE_36h DE_36h-TP73_MA0861.2 16 bp overlap
Motif DE_36h DE_36h-TP73_MA0861.2 16 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 273 bp overlap
TWIST1 1 dataset
Motif DE_36h DE_36h-TWIST1_MA1123.3 8 bp overlap
Tcf12 1 dataset
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_36h DE_36h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
ZFP42 1 dataset
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
ZIM3 1 dataset
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 180 bp overlap
ZNF558 1 dataset
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
ZNF675 1 dataset
Motif DE_36h DE_36h-ZNF675_MA1714.2 19 bp overlap
ZNF680 1 dataset
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
ZNF784 1 dataset
Motif DE_36h DE_36h-ZNF784_MA1717.2 8 bp overlap