chr5 : 173,653,855 173,654,363
508 bp 34 TFs 3 linked genes
This 508 bp open chromatin element is linked to BOD1, LINC01484, and CPEB4 and is bound by 34 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
BOD1 37.5 kb Distal Multiome
LINC01484 92.2 kb Distal Multiome
CPEB4 234.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:173,648,855 – 173,659,363
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 124 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 261 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 282 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 138 bp overlap
CBX5 1 dataset
ChIP K562 ENCFF188CYP 197 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 133 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 289 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP ZR751 GSE72249.FOXA1.ZR751 147 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 402 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 262 bp overlap
ChIP DE DE-GATA6-2 477 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 264 bp overlap
Gli1 1 dataset
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 121 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 338 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 129 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 180 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 74 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 167 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 257 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 177 bp overlap
NFYA 1 dataset
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 266 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 234 bp overlap
PRDM1 1 dataset
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
RBPJ 1 dataset
ChIP HCC1599 GSE116871.RBPJ.HCC1599 127 bp overlap
SETDB1 4 datasets
ChIP HEK293 ENCFF676PLV 364 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 113 bp overlap
ChIP K-562 ENCSR000EWI.SETDB1.K-562 131 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 113 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 314 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 333 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 304 bp overlap
TFAP2C 2 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 127 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 208 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 136 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 197 bp overlap
ZBTB7B 1 dataset
Motif DE_72h DE_72h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif DE_72h DE_72h-ZBTB7C_MA0695.2 8 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 181 bp overlap
ChIP K562 ENCFF255RZG 166 bp overlap
ZNF652 1 dataset
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap