chr1 : 99,845,046 – 99,845,513

467 bp 78 TFs 1 linked gene

This 467 bp open chromatin element is linked to AGL and is bound by 78 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
AGL		4.8 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

78 transcription factors

Alx1 1 dataset

Motif ES_0h ES_0h-Alx1_MA0854.2 8 bp overlap

Alx4 1 dataset

Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap

Arid3b 1 dataset

Motif ES_0h ES_0h-Arid3b_MA0601.2 7 bp overlap

Arx 1 dataset

Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap

BARX1 1 dataset

Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap

CDX1 2 datasets

Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap

Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap

CDX2 2 datasets

Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap

Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap

CDX4 2 datasets

Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap

Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF031ISE 170 bp overlap

ChIP BLaER1 ENCFF460KDD 193 bp overlap

DLX1 1 dataset

Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap

ERF::FIGLA 1 dataset

Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap

ERF::FOXI1 1 dataset

Motif ES_0h ES_0h-ERFFOXI1_MA1935.2 10 bp overlap

ETV1 1 dataset

Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap

ETV2::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV2::FOXI1 1 dataset

Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::FIGLA 2 datasets

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

Motif ES_0h ES_0h-ETV5FIGLA_MA1945.2 14 bp overlap

EWSR1-FLI1 2 datasets

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap

FIGLA 2 datasets

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap

FOXF2 2 datasets

Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap

Motif ES_0h ES_0h-FOXF2_MA0030.2 9 bp overlap

FOXG1 2 datasets

Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap

Motif ES_0h ES_0h-FOXG1_MA0613.1 8 bp overlap

FOXJ2::ELF1 1 dataset

Motif ES_0h ES_0h-FOXJ2ELF1_MA1952.2 11 bp overlap

FOXK1 2 datasets

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

Motif ES_0h ES_0h-FOXK1_MA0852.3 7 bp overlap

FOXK2 2 datasets

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

Motif ES_0h ES_0h-FOXK2_MA1103.3 7 bp overlap

FOXL1 2 datasets

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

Motif ES_0h ES_0h-FOXL1_MA0033.2 7 bp overlap

FOXN3 2 datasets

Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap

Motif ES_0h ES_0h-FOXN3_MA1489.1 8 bp overlap

FOXO4 2 datasets

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

Motif ES_0h ES_0h-FOXO4_MA0848.1 7 bp overlap

FOXO6 2 datasets

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

Motif ES_0h ES_0h-FOXO6_MA0849.1 7 bp overlap

FOXP3 2 datasets

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

Motif ES_0h ES_0h-FOXP3_MA0850.1 7 bp overlap

Foxf1 2 datasets

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Motif ES_0h ES_0h-Foxf1_MA1606.2 7 bp overlap

Foxj2 2 datasets

Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap

Motif ES_0h ES_0h-Foxj2_MA0614.1 8 bp overlap

Foxj3 2 datasets

Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap

Motif ES_0h ES_0h-Foxj3_MA0851.2 9 bp overlap

Foxo1 2 datasets

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Motif ES_0h ES_0h-Foxo1_MA0480.3 7 bp overlap

Foxo3 2 datasets

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

Motif ES_0h ES_0h-Foxo3_MA0157.4 7 bp overlap

Foxq1 2 datasets

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap

GBX2 1 dataset

Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap

HIC2 2 datasets

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap

HMBOX1 1 dataset

Motif ES_0h ES_0h-HMBOX1_MA0895.2 7 bp overlap

HOXA7 1 dataset

Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap

HOXD9 2 datasets

Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap

Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap

Hmx1 1 dataset

Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap

Hmx2 1 dataset

Motif ES_0h ES_0h-Hmx2_MA0897.2 15 bp overlap

Hmx3 1 dataset

Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap

IKZF1 1 dataset

Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap

IKZF2 1 dataset

Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap

KLF15 2 datasets

Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap

Motif ES_0h ES_0h-KLF15_MA1513.2 8 bp overlap

LBX2 1 dataset

Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap

MSX1 1 dataset

Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap

Nobox 1 dataset

Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap

PAX3 3 datasets

Motif DE_12h DE_12h-PAX3_MA1546.2 14 bp overlap

Motif ES_0h ES_0h-PAX3_MA0780.1 10 bp overlap

Motif ES_0h ES_0h-PAX3_MA1546.2 14 bp overlap

PHOX2A 1 dataset

Motif ES_0h ES_0h-PHOX2A_MA0713.1 11 bp overlap

Pax7 1 dataset

Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap

Prdm15 2 datasets

Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap

Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap

Ptf1A 2 datasets

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap

RAX 1 dataset

Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap

RNF2 1 dataset

ChIP HepG2 ENCFF737WCD 166 bp overlap

STAT1 2 datasets

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap

Stat4 3 datasets

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap

TFAP4::FLI1 2 datasets

Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap

Motif ES_0h ES_0h-TFAP4FLI1_MA1967.2 14 bp overlap

ZBTB18 2 datasets

Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap

Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap

ZBTB33 1 dataset

ChIP K562 ENCFF875HLX 324 bp overlap

ZEB1 2 datasets

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap

ZNF175 1 dataset

Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap

ZNF184 2 datasets

Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap

Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap

ZNF213 2 datasets

Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap

Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap

ZNF214 2 datasets

Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap

Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap

ZNF418 2 datasets

Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap

Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap

ZNF449 1 dataset

Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap

Zic1::Zic2 1 dataset

Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 1 dataset

Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap