chr5 : 88,509,522 88,509,757
235 bp 46 TFs 0 linked genes
This 235 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:88,504,522 – 88,514,757
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 178 bp overlap
CDK9 3 datasets
ChIP MM1-S_DMSO GSE42355.CDK9.MM1-S_DMSO 235 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 221 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 202 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 182 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 235 bp overlap
CTCF 1 dataset
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 235 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 172 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 155 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 188 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 198 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 129 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 235 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 235 bp overlap
GATA1 2 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 56 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 179 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 196 bp overlap
GATA4 3 datasets
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 235 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 235 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 235 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 164 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 178 bp overlap
ChIP foregut GSE117136.GATA6.foregut 235 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 235 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 224 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 235 bp overlap
ChIP K562 ENCFF055GAZ 198 bp overlap
ChIP K562 ENCFF317JJX 195 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 158 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 235 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 217 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 207 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 235 bp overlap
ChIP K562 ENCFF167YID 182 bp overlap
NOTCH1 1 dataset
ChIP CD34 GSE63010.NOTCH1.CD34 130 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 235 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 221 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 215 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 193 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 235 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 212 bp overlap
PRDM4 2 datasets
ChIP HEK293 ENCFF069PHD 175 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 235 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 211 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 171 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 235 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 183 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 130 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 182 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 200 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 225 bp overlap
TRIM28 5 datasets
ChIP HEK293 ENCFF265CEM 235 bp overlap
ChIP HEK293 ENCFF582MWI 235 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 136 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 219 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 141 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 235 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 122 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 152 bp overlap
ZNF324 1 dataset
ChIP HEK293 GSE76494.ZNF324.HEK293 167 bp overlap
ZNF501 3 datasets
ChIP HEK293 ENCFF066RAQ 235 bp overlap
ChIP HEK293 ENCFF066RAQ 183 bp overlap
ChIP HEK293 ENCSR461ZJT.ZNF501.HEK293 222 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 180 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 235 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 212 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 234 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 235 bp overlap