chr5 : 62,011,123 62,011,421
298 bp 31 TFs 0 linked genes
This 298 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:62,006,123 – 62,016,421
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 298 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 273 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 175 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 121 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 143 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 102 bp overlap
EZH2 2 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 298 bp overlap
ChIP neural progenitor cell ENCFF018MKA 298 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 298 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 211 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 223 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 237 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 298 bp overlap
ChIP DE DE-FOXA2-2 298 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 191 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 161 bp overlap
ChIP SK-N-SH ENCFF764OZD 105 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 55 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 298 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 298 bp overlap
ChIP DE DE-GATA6-2 298 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 240 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 185 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 131 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 195 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 113 bp overlap
NANOG 3 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 197 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 266 bp overlap
ChIP hESC GSE18292.NANOG.hESC 94 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 151 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 298 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 82 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 223 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 200 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 298 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 244 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 298 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 93 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 139 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 139 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 206 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 156 bp overlap