chr1 : 90,502,147 – 90,502,543

396 bp 63 TFs 0 linked genes

This 396 bp open chromatin element has no linked target genes and is bound by 63 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

63 transcription factors

BARHL1 1 dataset

Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap

BARHL2 1 dataset

Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap

BCL11A 2 datasets

ChIP GM12878 ENCFF717YPR 251 bp overlap

ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 196 bp overlap

Bach1::Mafk 1 dataset

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

CTCF 9 datasets

ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 249 bp overlap

ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 107 bp overlap

ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 222 bp overlap

ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 149 bp overlap

ChIP OCI-LY1 ENCFF455ESK 396 bp overlap

ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 372 bp overlap

ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 155 bp overlap

ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 204 bp overlap

ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 258 bp overlap

CTCFL 3 datasets

Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap

ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 170 bp overlap

ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 202 bp overlap

DPF2 1 dataset

ChIP GM12878 ENCSR509FWH.DPF2.GM12878 226 bp overlap

Dmrt1 1 dataset

Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 166 bp overlap

ESR1 1 dataset

ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 284 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 396 bp overlap

ChIP DE DE-FOXA2-2 370 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXD2 1 dataset

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

GATA6 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 289 bp overlap

GATAD2B 1 dataset

ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 358 bp overlap

GLIS2 1 dataset

Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 262 bp overlap

HSF1 1 dataset

Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap

Hmx2 1 dataset

Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap

IKZF1 1 dataset

ChIP GM12878 ENCFF753XDO 396 bp overlap

ISL2 1 dataset

Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap

MAF::NFE2 1 dataset

Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap

MEIS3 1 dataset

Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap

MLLT1 1 dataset

ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 213 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 92 bp overlap

NCOR2 1 dataset

ChIP LS180_125 GSE39277.NCOR2.LS180_125 94 bp overlap

NFATC3 1 dataset

ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 213 bp overlap

NR2C1 1 dataset

ChIP GM12878 ENCSR784VIQ.NR2C1.GM12878 149 bp overlap

NR2F1 2 datasets

ChIP GM12878 ENCFF273VKX 326 bp overlap

ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 231 bp overlap

Nfe2l2 1 dataset

Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap

Nkx3-2 1 dataset

Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap

PAX5 2 datasets

ChIP GM12878 ENCSR000BHD.PAX5.GM12878 182 bp overlap

ChIP NALM-6 GSE126300.PAX5.NALM-6 214 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F3 1 dataset

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

POU5F1 4 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 254 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 285 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 219 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAD21 1 dataset

ChIP K-562 ENCSR000BKV.RAD21.K-562 88 bp overlap

Runx1 1 dataset

Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 342 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 396 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 388 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 242 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 170 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 256 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 265 bp overlap

TARDBP 1 dataset

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 221 bp overlap

TBX21 2 datasets

ChIP GM12878 ENCFF951HUW 339 bp overlap

ChIP GM12878 ENCSR739IHN.TBX21.GM12878 340 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 310 bp overlap

TRIM22 1 dataset

ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 396 bp overlap

VDR 1 dataset

ChIP LS180 GSE31939.VDR.LS180 151 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF320 1 dataset

Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap

ZNF549 1 dataset

Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap

ZNF582 1 dataset

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

ZNF701 1 dataset

Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Zbtb2 1 dataset

Motif DE_12h DE_12h-Zbtb2_MA2340.1 10 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap