chr3 : 174,956,972 174,957,566
594 bp 30 TFs 0 linked genes
This 594 bp open chromatin element has no linked target genes and is bound by 30 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:174,951,972 – 174,962,566
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 258 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 345 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 212 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 160 bp overlap
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 211 bp overlap
BRD4 9 datasets
ChIP Hs-352-Sk GSE83725.BRD4.Hs-352-Sk 367 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 68 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 447 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 427 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 495 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 262 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 136 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 477 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 572 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 269 bp overlap
DUX4 1 dataset
ChIP HEK293 GSE75791.DUX4.HEK293 301 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 300 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 489 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 353 bp overlap
FOXA1 1 dataset
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 243 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 302 bp overlap
FOXM1 1 dataset
ChIP SK-N-SH ENCFF404RGX 51 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 177 bp overlap
GATA3 2 datasets
ChIP A1A3_Dex GSE112491.GATA3.A1A3_Dex 439 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 119 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 564 bp overlap
ChIP DE DE-GATA4-2 522 bp overlap
ChIP foregut GSE117136.GATA4.foregut 594 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 420 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 538 bp overlap
ChIP DE DE-GATA6-2 594 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 397 bp overlap
ChIP foregut GSE117136.GATA6.foregut 390 bp overlap
MED1 3 datasets
ChIP RH4 GSE83726.MED1.RH4 357 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 105 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 71 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT916 GSE128230.MED12.leiomyoma_PT916 65 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 75 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 62 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 113 bp overlap
PGR 2 datasets
ChIP T-47D GSE31129.PGR.T-47D 119 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 139 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 141 bp overlap
RELA 6 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 255 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 376 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 515 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 379 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 403 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 137 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 129 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 434 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 152 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 77 bp overlap
SMARCA4 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 193 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 299 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 111 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 115 bp overlap
ZNF608 1 dataset
ChIP SK-N-SH ENCFF518LYG 150 bp overlap