chr3 : 160,217,788 160,218,399
611 bp 34 TFs 2 linked genes
This 611 bp open chromatin element is linked to IL12A-AS1 and C3orf80 and is bound by 34 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
IL12A-AS1 6.9 kb Proximal Proximity
C3orf80 7.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:160,212,788 – 160,223,399
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 227 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 153 bp overlap
BRD4 4 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 169 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 611 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 611 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 611 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 72 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 335 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 374 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 290 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 304 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 351 bp overlap
GATA2 8 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 147 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 177 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 177 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 253 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 331 bp overlap
ChIP SH-SY5Y ENCFF485YIB 104 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 360 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 171 bp overlap
GATA3 14 datasets
ChIP BE2C GSE65664.GATA3.BE2C 219 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 273 bp overlap
ChIP MCF-7 ENCFF178GBS 401 bp overlap
ChIP MCF-7 ENCFF352QVM 157 bp overlap
ChIP MCF-7 ENCFF437NQS 353 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 353 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 333 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 283 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 185 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 197 bp overlap
ChIP NGP GSE65664.GATA3.NGP 171 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 171 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 211 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 275 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 331 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 254 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 220 bp overlap
GATA6 3 datasets
ChIP DE_D2 S55-DE-d2-GATA6-exp2 315 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 295 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 311 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H_bioMerck GSE116344.HDAC2.RH4_DMSO-6H_bioMerck 158 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 244 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 153 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 214 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 178 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap