chr3 : 157,501,950 – 157,502,202
252 bp 39 TFs 1 linked gene
This 252 bp open chromatin element is linked to VEPH1 and is bound by 39 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VEPH1 2.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:157,496,950 – 157,507,202
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 201 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 150 bp overlap
BRD4 2 datasets
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 252 bp overlap
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 252 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 252 bp overlap
CTCF 1 dataset
ChIP C4-2B ENCFF821XVN 83 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Dmbx1 1 dataset
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
EBF1 3 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 224 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 236 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 231 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 145 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 225 bp overlap
NOTCH1 1 dataset
ChIP GSC8-11_dasatinib GSE74557.NOTCH1.GSC8-11_dasatinib 214 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 214 bp overlap
RBPJ 6 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
ChIP GIC GSE79734.RBPJ.GIC 213 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 247 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 252 bp overlap
RFX1 1 dataset
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 60 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 252 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 252 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 252 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 217 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 136 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 166 bp overlap
SOX10 1 dataset
ChIP 501-mel GSE61965.SOX10.501-mel 242 bp overlap
SOX2 8 datasets
ChIP HNSC GSE69479.SOX2.HNSC 252 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 244 bp overlap
ChIP NPC GSE122631.SOX2.NPC 252 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 200 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 234 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 207 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 252 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 252 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 195 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF75A 2 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
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