chr3 : 141,345,991 141,346,383
392 bp 38 TFs 0 linked genes
This 392 bp open chromatin element has no linked target genes and is bound by 38 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:141,340,991 – 141,351,383
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 229 bp overlap
BRD4 1 dataset
ChIP COLO-205 GSE73319.BRD4.COLO-205 306 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 223 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 275 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 158 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 207 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 156 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 280 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 332 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 176 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 304 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 239 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 216 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 265 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 177 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 252 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 225 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 188 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 341 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 146 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 149 bp overlap
ChIP DE DE-FOXA2-1 374 bp overlap
ChIP DE DE-FOXA2-2 267 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 354 bp overlap
ChIP DE DE-GATA4-2 392 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 216 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 376 bp overlap
ChIP DE DE-GATA6-2 392 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 333 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 301 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 334 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 264 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 392 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 373 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 266 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 206 bp overlap
HNF4A 4 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 118 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 114 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 228 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 221 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 155 bp overlap
KMT2A 2 datasets
ChIP MV4-11 GSE79899.KMT2A.MV4-11 247 bp overlap
ChIP THP-1 GSE79899.KMT2A.THP-1 185 bp overlap
MAX 1 dataset
ChIP GM12878 ENCFF849VCQ 76 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 150 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 376 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 337 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 270 bp overlap
MGA 1 dataset
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 216 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 111 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 272 bp overlap
POLR2A 1 dataset
ChIP transverse colon ENCFF193UMS 250 bp overlap
RELA 1 dataset
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 158 bp overlap
REST 1 dataset
ChIP liver ENCFF577AZT 340 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 332 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 206 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 392 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 261 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 255 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 268 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 189 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 134 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 88 bp overlap
YY1 2 datasets
ChIP liver ENCFF400MBC 100 bp overlap
ChIP liver ENCFF515BWJ 84 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 157 bp overlap