chr3 : 98,514,790 98,515,181
391 bp 23 TFs 2 linked genes
This 391 bp open chromatin element is linked to ENSG00000248839 and CLDND1 and is bound by 23 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000248839 7.4 kb Proximal Proximity
CLDND1 7.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:98,509,790 – 98,520,181
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116 GSE47938.AFF4.HCT-116 371 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 192 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 159 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 254 bp overlap
FOXA1 2 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 116 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 165 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 69 bp overlap
ChIP DE DE-FOXA2-1 357 bp overlap
ChIP DE DE-FOXA2-2 328 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 137 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 105 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 391 bp overlap
ChIP DE DE-GATA4-2 391 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 254 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 215 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 272 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 381 bp overlap
ChIP DE DE-GATA6-2 391 bp overlap
MAF 1 dataset
ChIP lymphocyte_Th17_IL10+_Day5 GSE101389.MAF.lymphocyte_Th17_IL10+_Day5 103 bp overlap
MAFK 1 dataset
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 114 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 252 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 97 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 315 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 391 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 255 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 315 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 198 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 391 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 391 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 306 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 235 bp overlap
SMAD5 1 dataset
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 113 bp overlap
STAT5B 2 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 177 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 205 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 391 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 321 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 287 bp overlap