chr3 : 74,297,433 – 74,297,816

383 bp 72 TFs 0 linked genes

This 383 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

72 transcription factors

ARGFX 1 dataset

Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap

Alx4 1 dataset

Motif DE_60h DE_60h-Alx4_MA0853.2 12 bp overlap

Arx 1 dataset

Motif DE_60h DE_60h-Arx_MA0874.2 10 bp overlap

BARX1 1 dataset

Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap

CUX1 1 dataset

Motif DE_60h DE_60h-CUX1_MA0754.3 9 bp overlap

CUX2 1 dataset

Motif DE_60h DE_60h-CUX2_MA0755.2 9 bp overlap

DLX1 1 dataset

Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap

Dlx2 1 dataset

Motif DE_60h DE_60h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif DE_60h DE_60h-Dlx5_MA1476.3 8 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 199 bp overlap

ERF::FOXO1 1 dataset

Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap

EZH2_phosphoT487 1 dataset

ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 55 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 383 bp overlap

ChIP DE DE-FOXA2-2 356 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_60h DE_60h-FOXO1ELK1_MA1954.2 13 bp overlap

GATA1::TAL1 2 datasets

Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap

Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 383 bp overlap

ChIP DE DE-GATA4-2 383 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 383 bp overlap

ChIP DE DE-GATA6-2 383 bp overlap

Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 284 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 367 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 272 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 383 bp overlap

GBX2 1 dataset

Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap

Gata3 2 datasets

Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

HESX1 1 dataset

Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap

HLF 2 datasets

Motif DE_48h DE_48h-HLF_MA0043.4 9 bp overlap

Motif DE_60h DE_60h-HLF_MA0043.4 9 bp overlap

HOXA7 1 dataset

Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap

Hnf1A 2 datasets

Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap

Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap

IKZF1 1 dataset

Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap

JUN 1 dataset

ChIP DE_D2 S54-DE-d2-JUN-exp2 218 bp overlap

LBX2 1 dataset

Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap

Lhx3 1 dataset

Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap

MAFF 2 datasets

Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap

Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap

MSX1 1 dataset

Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap

Mafb 2 datasets

Motif DE_48h DE_48h-Mafb_MA0117.3 11 bp overlap

Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap

Msx3 1 dataset

Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap

NFIL3 2 datasets

Motif DE_48h DE_48h-NFIL3_MA0025.3 9 bp overlap

Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap

NR2F1 2 datasets

Motif DE_48h DE_48h-NR2F1_MA1537.2 13 bp overlap

Motif DE_60h DE_60h-NR2F1_MA1537.2 13 bp overlap

NR4A1 2 datasets

Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap

Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap

NRL 2 datasets

Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap

Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap

Nfatc2 1 dataset

Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap

Nobox 1 dataset

Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap

Nr2f6 2 datasets

Motif DE_48h DE_48h-Nr2f6_MA0677.2 13 bp overlap

Motif DE_60h DE_60h-Nr2f6_MA0677.2 13 bp overlap

ONECUT1 1 dataset

Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap

ONECUT3 1 dataset

Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap

PAX3 1 dataset

Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap

PBX2 1 dataset

Motif DE_60h DE_60h-PBX2_MA1113.3 9 bp overlap

POU2F1 2 datasets

Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap

Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap

POU3F1 2 datasets

Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap

Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap

POU3F2 2 datasets

Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap

Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap

POU5F1 2 datasets

Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap

Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap

PPARA::RXRA 2 datasets

Motif DE_48h DE_48h-PPARARXRA_MA1148.2 17 bp overlap

Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap

Pax7 1 dataset

Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap

Pparg::Rxra 2 datasets

Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap

Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap

RAX 1 dataset

Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap

SCRT1 2 datasets

Motif DE_48h DE_48h-SCRT1_MA0743.3 10 bp overlap

Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap

SCRT2 2 datasets

Motif DE_48h DE_48h-SCRT2_MA0744.3 10 bp overlap

Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 380 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 227 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 262 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 245 bp overlap

Sox11 1 dataset

Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap

Sox6 1 dataset

Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap

TCF7L1 2 datasets

Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap

Motif DE_60h DE_60h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 2 datasets

Motif DE_48h DE_48h-TCF7L2_MA0523.2 9 bp overlap

Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap

TRPS1 2 datasets

Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

VENTX 1 dataset

Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap

ZBTB17 1 dataset

Motif DE_60h DE_60h-ZBTB17_MA2102.1 8 bp overlap

ZNF354A 2 datasets

Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap

Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap

ZNF528 1 dataset

Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap