chr3 : 57,727,873 57,728,338
465 bp 20 TFs 5 linked genes
This 465 bp open chromatin element is linked to 5 target genes and is bound by 20 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
DENND6A 35.0 kb Distal Multiome
ARF4 130.7 kb Distal Multiome
SLMAP 136.5 kb Distal Multiome
PDE12 171.8 kb Distal Multiome
FLNB 280.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:57,722,873 – 57,733,338
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
CEBPA 2 datasets
ChIP HepG2 ENCFF175DFS 233 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 151 bp overlap
CEBPB 7 datasets
ChIP A549 ENCFF235AIY 193 bp overlap
ChIP A549 ENCFF781RLJ 242 bp overlap
ChIP H1 ENCFF871PTR 195 bp overlap
ChIP HeLa-S3 ENCFF722WEG 227 bp overlap
ChIP HepG2 ENCFF536NTI 186 bp overlap
ChIP Ishikawa ENCFF010USJ 213 bp overlap
ChIP MCF-7 ENCFF772ZTQ 206 bp overlap
CTCF 5 datasets
ChIP GM04648 GSE148179.CTCF.GM04648 232 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 166 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 267 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 259 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 161 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 230 bp overlap
ChIP BLaER1 ENCFF798NMV 238 bp overlap
EGR1 1 dataset
ChIP HCT116 ENCFF456NPQ 354 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 338 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 127 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 342 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 338 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 465 bp overlap
ChIP DE DE-FOXA2-2 465 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 465 bp overlap
ChIP DE DE-GATA4-2 465 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 465 bp overlap
ChIP DE DE-GATA6-2 465 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 449 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 362 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 362 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 465 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 341 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 356 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 463 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 316 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 465 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 465 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 442 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 465 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 465 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 265 bp overlap
TEAD1 2 datasets
ChIP H69 GSE62274.TEAD1.H69 444 bp overlap
ChIP HepG2 ENCFF661PNM 264 bp overlap
TEAD4 3 datasets
ChIP HepG2 ENCFF006QNB 313 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 336 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 145 bp overlap
ZNF770 4 datasets
ChIP HEK293 ENCFF468FCG 239 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 162 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 242 bp overlap
ChIP HepG2 ENCFF233UVH 156 bp overlap