chr3 : 57,194,399 57,195,064
665 bp 31 TFs 4 linked genes
This 665 bp open chromatin element is linked to 4 target genes and is bound by 31 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
HESX1 4.9 kb Proximal Proximity
IL17RD 29.5 kb Distal Multiome
APPL1 33.0 kb Distal Multiome
ARHGEF3 115.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:57,189,399 – 57,200,064
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 355 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 302 bp overlap
CTCF 2 datasets
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 103 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 213 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 402 bp overlap
ERG 2 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 131 bp overlap
ChIP VCaP GSE49091.ERG.VCaP 170 bp overlap
ESR1 2 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 130 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 314 bp overlap
ChIP neural progenitor cell ENCFF018MKA 541 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 488 bp overlap
ChIP DE DE-FOXA2-2 501 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 166 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 191 bp overlap
ChIP DE DE-GATA4-1 647 bp overlap
ChIP DE DE-GATA4-2 663 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 257 bp overlap
ChIP foregut GSE117136.GATA4.foregut 665 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 389 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 603 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 569 bp overlap
ChIP DE DE-GATA6-2 636 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 397 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 355 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 514 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 413 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 314 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 488 bp overlap
ChIP foregut GSE117136.GATA6.foregut 643 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 344 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 306 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 460 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 475 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 425 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 389 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 521 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 478 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 337 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 185 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 211 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 156 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 319 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 353 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 186 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 145 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 146 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 472 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 424 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 494 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 422 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 106 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 498 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 469 bp overlap
ZNF547 1 dataset
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap