chr3 : 37,457,727 – 37,457,980
253 bp 36 TFs 1 linked gene
This 253 bp open chromatin element is linked to ITGA9 and is bound by 36 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ITGA9 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:37,452,727 – 37,462,980
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 229 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 141 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 70 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 158 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 165 bp overlap
EBF1 4 datasets
ChIP GM12878 ENCFF167CZS 163 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 95 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 162 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 200 bp overlap
ERG 1 dataset
ChIP ME-1 GSE46044.ERG.ME-1 113 bp overlap
EZH2 3 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 253 bp overlap
ChIP HeLa-S3 ENCFF318LHU 190 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 119 bp overlap
GATA2 1 dataset
ChIP SKH1 GSE87283.GATA2.SKH1 145 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 184 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 221 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 178 bp overlap
GFI1B 1 dataset
ChIP SET-2 GSE121424.GFI1B.SET-2 184 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 253 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 253 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 182 bp overlap
KDM1A 2 datasets
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 196 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 155 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 112 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 201 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 87 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 154 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR168SMX.NR2F2.liver 245 bp overlap
REST 54 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 253 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 174 bp overlap
ChIP A549 ENCFF148AIS 253 bp overlap
ChIP A549 ENCFF148AIS 245 bp overlap
ChIP GM12878 ENCFF235NGC 202 bp overlap
ChIP GM12878 ENCFF943QPB 208 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 227 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 202 bp overlap
ChIP GM23338 ENCFF024TCL 209 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 122 bp overlap
ChIP H1 ENCFF203SWY 143 bp overlap
ChIP H1 ENCFF429RUE 177 bp overlap
ChIP HEK293 ENCFF073DOT 253 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 253 bp overlap
ChIP HL-60 ENCFF589LOF 170 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 253 bp overlap
ChIP HeLa-S3 ENCFF911DTC 172 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 238 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 136 bp overlap
ChIP Ishikawa ENCFF456OHV 204 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 253 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 253 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 253 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 180 bp overlap
ChIP K562 ENCFF430APM 117 bp overlap
ChIP K562 ENCFF688UKW 253 bp overlap
ChIP K562 ENCFF758CZL 253 bp overlap
ChIP K562 ENCFF758CZL 185 bp overlap
ChIP LNCaP GSE119385.REST.LNCaP 222 bp overlap
ChIP MCF-7 ENCFF893RRD 167 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 237 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 167 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 139 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 174 bp overlap
ChIP PFSK-1 ENCFF668WMP 227 bp overlap
ChIP PFSK-1 ENCFF845VHA 100 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 253 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 188 bp overlap
ChIP SK-N-SH ENCFF635KBN 92 bp overlap
ChIP SK-N-SH ENCFF861MKH 194 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 128 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 253 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 253 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 229 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 253 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 253 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 253 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 157 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 193 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 202 bp overlap
ChIP liver ENCFF240FWT 253 bp overlap
ChIP liver ENCFF577AZT 176 bp overlap
ChIP liver ENCSR867WPH.REST.liver 215 bp overlap
ChIP liver ENCSR893QWP.REST.liver 253 bp overlap
RUNX1 3 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 155 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 155 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 229 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 171 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 172 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 206 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 247 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 164 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 239 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 114 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 253 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 142 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 169 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 253 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 253 bp overlap
STAT3 6 datasets
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 70 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 93 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 99 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 198 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 195 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 195 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 121 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 139 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 253 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 253 bp overlap
TEAD4 1 dataset
ChIP A-549 ENCSR000BUD.TEAD4.A-549 106 bp overlap
ZNF143 3 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 182 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 224 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 102 bp overlap
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