chr3 : 28,239,215 28,239,408
193 bp 35 TFs 1 linked gene
This 193 bp open chromatin element is linked to CMC1 and is bound by 35 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CMC1 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:28,234,215 – 28,244,408
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 103 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 193 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 153 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 183 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 68 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 193 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 188 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 193 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 193 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 193 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 70 bp overlap
ChIP K562 ENCFF455EEO 162 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 170 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 193 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 170 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 139 bp overlap
NFE2 3 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 111 bp overlap
ChIP K562 ENCFF047YKA 161 bp overlap
ChIP K562 ENCFF163BSI 56 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 186 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 193 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 165 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 184 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 193 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF317 2 datasets
ChIP K562 ENCFF896LCF 116 bp overlap
ChIP WTC11 ENCFF537KXI 118 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 193 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap