chr3 : 23,943,707 23,944,084
377 bp 32 TFs 1 linked gene
This 377 bp open chromatin element is linked to NR1D2 and is bound by 32 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NR1D2 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:23,938,707 – 23,949,084
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 229 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 73 bp overlap
E4F1 1 dataset
ChIP K562 ENCFF622HMZ 152 bp overlap
ESR1 1 dataset
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 161 bp overlap
EZH2 1 dataset
ChIP keratinocyte ENCFF070STK 72 bp overlap
FOXA1 33 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 312 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 361 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 226 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 247 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 252 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 257 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 240 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 256 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 275 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 196 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 279 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 257 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 250 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 159 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 130 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 146 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 116 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 212 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 128 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 219 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 144 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 181 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 353 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 220 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 321 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 140 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 163 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 165 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 167 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 158 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 184 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 86 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 377 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 377 bp overlap
FOXK2 2 datasets
ChIP K-562 ENCSR302AWT.FOXK2.K-562 130 bp overlap
ChIP K562 ENCFF245WKP 94 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 55 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 266 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 377 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 258 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 377 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 238 bp overlap
ChIP K562 ENCFF348IBL 320 bp overlap
KDM5B 1 dataset
ChIP K562 ENCFF049WWX 271 bp overlap
L3MBTL2 3 datasets
ChIP HEK293T ENCFF482NJV 121 bp overlap
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 53 bp overlap
ChIP K562 ENCFF320EQC 161 bp overlap
MNT 4 datasets
ChIP K-562 ENCSR512NLO.MNT.K-562 53 bp overlap
ChIP K562 ENCFF342DNS 104 bp overlap
ChIP K562 ENCFF450LDL 86 bp overlap
ChIP K562 ENCFF820IGH 136 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 377 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 85 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 116 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 222 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 377 bp overlap
RELA 1 dataset
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 125 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 377 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 337 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 340 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 66 bp overlap
ChIP K562 ENCFF506JCB 199 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 200 bp overlap
TBL1XR1 1 dataset
ChIP K562 ENCFF899VEC 230 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 127 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 82 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 377 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 341 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 350 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 336 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 292 bp overlap