chr3 : 21,382,257 – 21,382,978
721 bp 54 TFs 0 linked genes
This 721 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:21,377,257 – 21,387,978
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
CDX2 2 datasets
Motif DE_48h DE_48h-CDX2_MA0465.3 8 bp overlap
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 251 bp overlap
ChIP BLaER1 ENCFF680YXW 268 bp overlap
FIGLA 3 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 481 bp overlap
ChIP DE DE-FOXA2-2 555 bp overlap
FOXD2 2 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXF2 2 datasets
Motif DE_48h DE_48h-FOXF2_MA0030.2 9 bp overlap
Motif DE_60h DE_60h-FOXF2_MA0030.2 9 bp overlap
FOXH1 2 datasets
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
FOXK1 2 datasets
Motif DE_48h DE_48h-FOXK1_MA0852.3 7 bp overlap
Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap
FOXK2 2 datasets
Motif DE_48h DE_48h-FOXK2_MA1103.3 7 bp overlap
Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap
FOXL1 2 datasets
Motif DE_48h DE_48h-FOXL1_MA0033.2 7 bp overlap
Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap
FOXO4 2 datasets
Motif DE_48h DE_48h-FOXO4_MA0848.1 7 bp overlap
Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap
FOXO6 2 datasets
Motif DE_48h DE_48h-FOXO6_MA0849.1 7 bp overlap
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
FOXP2 2 datasets
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
FOXP3 2 datasets
Motif DE_48h DE_48h-FOXP3_MA0850.1 7 bp overlap
Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap
Foxf1 2 datasets
Motif DE_48h DE_48h-Foxf1_MA1606.2 7 bp overlap
Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap
Foxo1 2 datasets
Motif DE_48h DE_48h-Foxo1_MA0480.3 7 bp overlap
Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap
Foxo3 2 datasets
Motif DE_48h DE_48h-Foxo3_MA0157.4 7 bp overlap
Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap
Foxq1 2 datasets
Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA2 3 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 597 bp overlap
ChIP DE DE-GATA4-2 655 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 551 bp overlap
ChIP DE DE-GATA6-2 719 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 558 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 542 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 535 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 663 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 524 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 210 bp overlap
GRHL2 2 datasets
Motif DE_48h DE_48h-GRHL2_MA1105.3 8 bp overlap
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HOXC13 3 datasets
Motif DE_36h DE_36h-HOXC13_MA0907.2 9 bp overlap
Motif DE_48h DE_48h-HOXC13_MA0907.2 9 bp overlap
Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 331 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 546 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 455 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 191 bp overlap
MAFK 3 datasets
Motif DE_36h DE_36h-MAFK_MA0496.4 10 bp overlap
Motif DE_48h DE_48h-MAFK_MA0496.4 10 bp overlap
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MZF1 2 datasets
Motif DE_36h DE_36h-MZF1_MA0056.3 8 bp overlap
Motif DE_72h DE_72h-MZF1_MA0056.3 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 299 bp overlap
NKX2-4 3 datasets
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 3 datasets
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-8_MA0673.2 8 bp overlap
NR2F1 2 datasets
Motif DE_36h DE_36h-NR2F1_MA0017.3 12 bp overlap
Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap
Nfat5 3 datasets
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 3 datasets
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap
Nkx2-1 3 datasets
Motif DE_36h DE_36h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_48h DE_48h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_72h DE_72h-Nkx2-1_MA1994.2 7 bp overlap
Nr2F6 2 datasets
Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
PPARG 3 datasets
Motif DE_36h DE_36h-PPARG_MA0066.2 19 bp overlap
Motif DE_48h DE_48h-PPARG_MA0066.2 19 bp overlap
Motif DE_72h DE_72h-PPARG_MA0066.2 19 bp overlap
Rarg 2 datasets
Motif DE_36h DE_36h-Rarg_MA0859.2 15 bp overlap
Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 246 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 292 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 355 bp overlap
SOX10 2 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 687 bp overlap
SP5 2 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Wt1 2 datasets
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Yy1 3 datasets
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZEB1 3 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 3 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF16 3 datasets
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
Motif DE_72h DE_72h-ZNF16_MA1654.2 21 bp overlap
ZNF341 2 datasets
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
Motif DE_60h DE_60h-ZNF341_MA1655.2 8 bp overlap
ZNF574 1 dataset
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
ZNF707 1 dataset
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
ZNF784 3 datasets
Motif DE_36h DE_36h-ZNF784_MA1717.2 8 bp overlap
Motif DE_48h DE_48h-ZNF784_MA1717.2 8 bp overlap
Motif DE_72h DE_72h-ZNF784_MA1717.2 8 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
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