chr3 : 7,016,105 – 7,016,599

494 bp 55 TFs 0 linked genes

This 494 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

55 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 356 bp overlap

ATF3 1 dataset

ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 102 bp overlap

BARX1 1 dataset

Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap

BRD4 1 dataset

ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 237 bp overlap

BSX 1 dataset

Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap

DLX1 1 dataset

Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap

ELF1 1 dataset

ChIP A-549 GSE122203.ELF1.A-549 162 bp overlap

EN2 1 dataset

Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 274 bp overlap

ESR1 5 datasets

ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 184 bp overlap

ChIP endometrioid-adenocarcinoma_tumor_4 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_4 225 bp overlap

ChIP endometrioid-adenocarcinoma_tumor_6 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_6 261 bp overlap

ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 394 bp overlap

ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 178 bp overlap

EZH2 1 dataset

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 494 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 253 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 494 bp overlap

ChIP DE DE-FOXA2-2 494 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 465 bp overlap

ChIP DE DE-GATA4-2 355 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 339 bp overlap

ChIP DE DE-GATA6-2 359 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap

GBX1 1 dataset

Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap

GBX2 1 dataset

Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap

HNF1A 1 dataset

ChIP HEE_1 GSE76376.HNF1A.HEE_1 92 bp overlap

HOXA7 1 dataset

Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap

Hmx2 1 dataset

Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap

JUN 2 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 200 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 202 bp overlap

KLF4 1 dataset

ChIP HAP1 GSE130417.KLF4.HAP1 175 bp overlap

LBX1 1 dataset

Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap

LBX2 1 dataset

Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap

LHX9 1 dataset

Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap

MSX1 1 dataset

Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap

NANOG 4 datasets

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 179 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 265 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 196 bp overlap

ChIP hESC GSE18292.NANOG.hESC 83 bp overlap

Nobox 1 dataset

Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap

ONECUT3 1 dataset

Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap

PAX3 1 dataset

Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 197 bp overlap

PDX1 1 dataset

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 191 bp overlap

PHOX2A 1 dataset

Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap

PROP1 1 dataset

Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap

PRRX2 1 dataset

Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap

Pax7 1 dataset

Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 209 bp overlap

RARA 3 datasets

ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 187 bp overlap

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 154 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 144 bp overlap

RAX 1 dataset

Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 329 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 241 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 271 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 165 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 418 bp overlap

SOX2 3 datasets

ChIP LK2 GSE137459.SOX2.LK2 336 bp overlap

ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 302 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 306 bp overlap

SS18 1 dataset

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 218 bp overlap

Sox6 1 dataset

Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap

ZIM3 1 dataset

Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap