chr2 : 221,458,674 221,458,973
299 bp 58 TFs 0 linked genes
This 299 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:221,453,674 – 221,463,973
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
Ascl2 1 dataset
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
BRD4 1 dataset
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 133 bp overlap
CTCF 17 datasets
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 163 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 167 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 119 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 89 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 93 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 299 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 215 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 154 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 166 bp overlap
ChIP keratinocyte ENCFF046PBT 102 bp overlap
ChIP keratinocyte ENCFF291YDC 102 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 88 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 144 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 206 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 117 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 60 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 126 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 77 bp overlap
ELL2 1 dataset
ChIP HCT-116_SERUM GSE30267.ELL2.HCT-116_SERUM 117 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 194 bp overlap
Ebf4 1 dataset
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 299 bp overlap
ChIP DE DE-FOXA2-2 299 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 55 bp overlap
GATA1 2 datasets
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 129 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 188 bp overlap
GATA2 1 dataset
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 299 bp overlap
ChIP DE DE-GATA4-2 299 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 233 bp overlap
ChIP foregut GSE117136.GATA4.foregut 299 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 299 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 260 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 153 bp overlap
ChIP DE DE-GATA6-1 299 bp overlap
ChIP DE DE-GATA6-2 299 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 299 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 299 bp overlap
ChIP foregut GSE117136.GATA6.foregut 299 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 291 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 283 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 293 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 299 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HOXB13 1 dataset
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 86 bp overlap
IRF2 1 dataset
Motif DE_72h DE_72h-IRF2_MA0051.2 16 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
MYF5 1 dataset
Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
MYOD1 2 datasets
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 156 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Neurod2 2 datasets
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Olig2 1 dataset
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PRDM1 1 dataset
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
Prdm5 1 dataset
Motif DE_72h DE_72h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 133 bp overlap
Rhox11 1 dataset
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 299 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 299 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 295 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 299 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 299 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
TFAP4 1 dataset
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
THAP1 1 dataset
Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap
TP63 4 datasets
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 73 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 89 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 87 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 51 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
ZBTB18 1 dataset
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZIM3 1 dataset
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF317 1 dataset
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
ZNF331 1 dataset
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
ZNF549 1 dataset
Motif DE_72h DE_72h-ZNF549_MA1728.2 8 bp overlap
ZSCAN16 1 dataset
Motif DE_60h DE_60h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN4 1 dataset
Motif DE_60h DE_60h-ZSCAN4_MA1155.1 15 bp overlap